BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1217.p
         (325 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094086|ref|YP_001099161.1| bifunctional riboflavin kinase/...   505   e-144

>gi|134094086|ref|YP_001099161.1| bifunctional riboflavin kinase/FMN
           adenylyltransferase [Herminiimonas arsenicoxydans]
          Length = 325

 Score =  505 bits (1301), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 235/325 (72%), Positives = 277/325 (85%)

Query: 1   MKVFRGLPTAESRAPCALTIGNFDGVHLGHQALLARVREAAGTLGLDAAVMTFEPHPREF 60
           MKVFRGLP A SRAPCAL IGNFDGVH GHQALLAR+RE A  +GL++AVMTFEPHPREF
Sbjct: 1   MKVFRGLPNAASRAPCALAIGNFDGVHRGHQALLARLREVASKMGLESAVMTFEPHPREF 60

Query: 61  FAQLAGTPERAPARIANLRDKLEALANSGIDRVVVEHFGSHFAALSPQDFIEKILVQGLH 120
           FA  AG P +AP RIA+LRDKL++LA +G+DRV+VEHF  HFA+LSPQ+F+EKILVQGLH
Sbjct: 61  FAARAGDPSKAPTRIASLRDKLQSLATAGVDRVIVEHFNEHFASLSPQEFVEKILVQGLH 120

Query: 121 VRWLMVGDDFCFGARRAGTLATLVEAGQHYGFAVHALPTVTNAGVRISSSAVREALAAAD 180
           V+WL+VG+DFC+GA+RAG +A+L+EAG+ YGF V +  TVT++G RISSSA+R+ALA  D
Sbjct: 121 VKWLIVGEDFCYGAKRAGNVASLIEAGKQYGFHVESQATVTSSGARISSSAIRKALAQGD 180

Query: 181 FELSRQLLGHPYVISGRVVHGKKLGRTIGFPTLNMRVGHKRPALSGIFVVQVHGLADHPL 240
           F  +  LLGHPY +SG V+HGKKLGRTIGFPTLN+RVGHK PALSGI++VQVHGLAD  L
Sbjct: 181 FAEAEVLLGHPYAMSGHVIHGKKLGRTIGFPTLNLRVGHKHPALSGIYIVQVHGLADDAL 240

Query: 241 PAVASLGVRPTVDDSGRVLLETHLLDFQGDCYGKLVRVEFLKKLRDEEKYVDLPTLTTAI 300
           P VAS+G+RPTVDDSGRVLLETHL D+   CYGKL+RVEFLKKLRDEEKY+DLPTLT AI
Sbjct: 241 PGVASIGIRPTVDDSGRVLLETHLFDYSQQCYGKLIRVEFLKKLRDEEKYIDLPTLTQAI 300

Query: 301 ARDVDHARAWFRENAGFAVSATDRI 325
            RD   AR +F++ A  A SATDRI
Sbjct: 301 ERDAVQARTYFKQIADSATSATDRI 325


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.139    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 643,457
Number of extensions: 27098
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 243
Effective length of database: 730,157
Effective search space: 177428151
Effective search space used: 177428151
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 129 (54.3 bits)