BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1216.p (964 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094085|ref|YP_001099160.1| isoleucyl-tRNA synthetase [Herm... 1624 0.0 gi|134093543|ref|YP_001098618.1| valyl-tRNA synthetase [Herminii... 189 5e-49 gi|134095829|ref|YP_001100904.1| leucyl-tRNA synthetase [Hermini... 57 3e-09 >gi|134094085|ref|YP_001099160.1| isoleucyl-tRNA synthetase [Herminiimonas arsenicoxydans] Length = 959 Score = 1624 bits (4205), Expect = 0.0, Method: Compositional matrix adjust. Identities = 766/965 (79%), Positives = 847/965 (87%), Gaps = 7/965 (0%) Query: 1 MSNNESSAKPGKPEKA-GKAPSKYPVNMTETAFPMRGDLAKREPQWVKEWQEKKVYQRIR 59 MS+N++ KPGKP K K SKYPVNMT+T+FPMRGDLAKREPQWVK+WQ+KK+Y++IR Sbjct: 1 MSDNQN--KPGKPNKPEAKQASKYPVNMTDTSFPMRGDLAKREPQWVKQWQDKKIYEKIR 58 Query: 60 KASAGRPKFILHDGPPYANGDIHIGHAVNKILKDTIVKARNMAGFDAQYVPGWDCHGMPI 119 +AS GRPKFILHDGPPYANGDIHIGHAVNKILKD IVK R G+DA YVPGWDCHGMPI Sbjct: 59 EASKGRPKFILHDGPPYANGDIHIGHAVNKILKDMIVKTRQFDGYDAPYVPGWDCHGMPI 118 Query: 120 EIQIEKQFGKNLPVAEVQAKARTYAGEQIERQKADFIRLGVLGEWDNPYKTMNFSNEADE 179 EIQIEK +GK+LP AEV K+R YA EQIERQK DFIRLGVLGEWDNPYKTM+F NEADE Sbjct: 119 EIQIEKLYGKSLPTAEVLEKSRAYATEQIERQKKDFIRLGVLGEWDNPYKTMDFGNEADE 178 Query: 180 LRALGKILEKGYVYRGLKPVNWCFDCGSALAEAEVEYQDKRDPAIDVGFPFAEHDKVATA 239 +RALG +LEKGYVYRGLKPVNWCFDCGSALAEAEVEYQDKRDPAIDVGFPFAE +KVA A Sbjct: 179 IRALGTLLEKGYVYRGLKPVNWCFDCGSALAEAEVEYQDKRDPAIDVGFPFAEPEKVAKA 238 Query: 240 FGLTELPTRNGYIVIWTTTPWTIPANQALNVHPEFDYALVETTRNGEATLLILAKDLVAS 299 FGL +LPT GY VIWTTTPWTIPANQALNVHPEF YALV+T R GE LLILA DLV + Sbjct: 239 FGLAKLPTNKGYAVIWTTTPWTIPANQALNVHPEFTYALVQTERKGETVLLILAADLVEA 298 Query: 300 CLERFGLEGKVIATTTGEKLSLIRFHHPLAKADAGYDRLSPVFLGEYVTADSGTGIVHSS 359 L+R+GLEGK IAT GE L++I+F HP A D GY+RLSP++ G YVTADSGTGIVHS+ Sbjct: 299 TLQRYGLEGKTIATCVGEALAMIKFKHPFADVDPGYNRLSPIYPGTYVTADSGTGIVHSA 358 Query: 360 PAYGIEDFISCKAHGMKDDDILNPVMGDGRYASWLPLFAGLTIWEASKPICDKLAEMGSL 419 PAYGIEDFISCK+HG+KDD+I+ PVM DG+YASWLPLF GLTIWEASKPIC KL E+GSL Sbjct: 359 PAYGIEDFISCKSHGLKDDEIVAPVMADGKYASWLPLFGGLTIWEASKPICAKLDEVGSL 418 Query: 420 FKLVMFSHSYMHCWRHKSPIIYRATSQWFASMDNTPKDGGPSLRQTALQGIEDTAFFPGW 479 FKLVMF HSYMHCWRHK+PIIYRATSQWFA MD PK+ G +LR+TAL IE T FFPGW Sbjct: 419 FKLVMFDHSYMHCWRHKTPIIYRATSQWFAGMDVMPKNQGTTLRETALAAIEQTEFFPGW 478 Query: 480 GKARLHGMIANRPDWTLSRQRQWGVPMAFFVHKETGELHPRTPELIEQVAQRIEKSGIEA 539 GKARLHGMIANRPDWTLSRQRQWGVPMAFFVHKE+G+LHPRTPEL+EQ+AQR+EK+GIEA Sbjct: 479 GKARLHGMIANRPDWTLSRQRQWGVPMAFFVHKESGDLHPRTPELLEQIAQRVEKNGIEA 538 Query: 540 WQALDPKELLGADAEHYVKNRDTLDVWFDSGTTHQTVLRGSHAQQSQFPADLYLEGSDQH 599 W LDPKELLG DA+ Y+KN+DTLDVWFDSGTTHQTVLRGSH +Q FPADLYLEGSDQH Sbjct: 539 WLKLDPKELLGDDADMYLKNKDTLDVWFDSGTTHQTVLRGSHKEQLAFPADLYLEGSDQH 598 Query: 600 RGWFHSSLLTSSMLNGRAPYKALLTHGFVVDGEGKKMSKSKGNVVAPQKVSDSLGAEILR 659 RGWFHSSLLTSSMLNG APYKALLTHGFVVDGEGKKMSKSKGNVVAPQKVSDSLGA+ILR Sbjct: 599 RGWFHSSLLTSSMLNGHAPYKALLTHGFVVDGEGKKMSKSKGNVVAPQKVSDSLGADILR 658 Query: 660 LWVASTDYSGELSISDEILKRVVEAYRRIRNTLRFLLANTSDFDPTQHAVPVAEMLEIDR 719 LWVA+TDYSGELSISDEILKRV E+YRRIRNTLRFLL+NTSDFD + V VA+MLEIDR Sbjct: 659 LWVAATDYSGELSISDEILKRVTESYRRIRNTLRFLLSNTSDFDAGKDLVAVADMLEIDR 718 Query: 720 YAIANMARLQAEVLAHFETYEFHPVVAKLQMYCSEDLGGFYLDILKDRLYTSGVESAARR 779 YAIA M +Q E++AH+ YEFHPV++KLQ YC+EDLGGFYLDILKDRLYTSGV S ARR Sbjct: 719 YAIAQMNAMQNEIVAHYRAYEFHPVISKLQGYCTEDLGGFYLDILKDRLYTSGVTSHARR 778 Query: 780 SAQSAVWHITQSLLRLMAPILSFTAEEAWRYFASKEAYEASGETIFSQVYYTLPEVADAD 839 SAQSA+WH+TQSLLRLMAP+LSFTAEEAW FA K+A G+TIF+Q YY LPEVAD D Sbjct: 779 SAQSAIWHLTQSLLRLMAPVLSFTAEEAWVIFAGKDA----GDTIFTQTYYALPEVADGD 834 Query: 840 ALLSKFAVLHEVRAAVTKQLEEVRIAGSIGSSLQAEVELKVSGEKAALLESLGDDLKFVL 899 ALL K+ +L EVR VTKQLEEVR+AG IGSSLQAEV L+ SG+K A LESL DDLKFVL Sbjct: 835 ALLGKYTLLREVRNDVTKQLEEVRVAGGIGSSLQAEVALQASGDKFAALESLDDDLKFVL 894 Query: 900 ITSAARVTPVATAEEEAVVVTPSTHQKCERCWHYRADVGSHADHPGLCGRCYSNLFGQGE 959 ITS A V VA EEE+V+VTPST+QKCERCWHYRADVGSHA+H GLCGRC +NLFG+GE Sbjct: 895 ITSQASVKKVAGTEEESVLVTPSTYQKCERCWHYRADVGSHAEHEGLCGRCVANLFGKGE 954 Query: 960 PRQFA 964 R FA Sbjct: 955 ARHFA 959 >gi|134093543|ref|YP_001098618.1| valyl-tRNA synthetase [Herminiimonas arsenicoxydans] Length = 969 Score = 189 bits (480), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 208/884 (23%), Positives = 358/884 (40%), Gaps = 177/884 (20%) Query: 37 DLAKREPQWVKEWQEKKVYQRIRKASAGRPKFILHDGPPYANGDIHIGHAVNKILKDTIV 96 D A E W EW+++ Y A +P F + PP G +H+GH N+ + D + Sbjct: 8 DPADIEAFWRTEWEKRGYY--TATTDADKPSFSIQLPPPNVTGTLHLGHGFNQTIMDGLT 65 Query: 97 KARNMAGFDAQYVPGWDCHGMPIEIQIEKQ----------FGKNLPVAEVQAKARTYAGE 146 + M GF+ ++PG D G+ +I +E+Q G+ + +V + + +G Sbjct: 66 RYHRMRGFNTAWIPGTDHAGIATQIVVERQLDAQKITRHDLGREKFIEKVW-EWKEKSGS 124 Query: 147 QIERQKADFIRLGVLGEWDNPYKTMNFSNEADELRALGKILEKGYVYRGLKPVNWCFDCG 206 I Q RLG +W Y TM+ +++E+G +YRG + VNW G Sbjct: 125 TITGQ---MRRLGTSPDWSREYFTMDEPRSKVVTEVFVRLVEQGLIYRGKRLVNWDPVLG 181 Query: 207 SALAEAEVEYQDKRDPAIDVGFPFAE---------HDKVATAFGLTELPTRNGYIVIWTT 257 +A+++ EV +++ ++ +P A+ +D+ A TE RN +IV+ TT Sbjct: 182 TAVSDLEVVSEEEDGHMWNIRYPLADGSTYKFPIAYDEAGNA---TEWEERN-FIVVATT 237 Query: 258 TPWTIPANQALNVHPEFDYALVETTRNGEATLLILAKDLVASCLERFGLEGKVIATTTGE 317 P T+ + A+ V P+ ER+ G+ Sbjct: 238 RPETMLGDVAVAVDPDD---------------------------ERY-------THLVGK 263 Query: 318 KLSLIRFHHPLAKADAGYDRLSPVFLGEYVTADSGTGIVHSSPAYGIEDFISCKAHGMKD 377 L+L PL DR P+ +YV + GTG V +PA+ D+ + H + Sbjct: 264 LLTL-----PLC------DRAIPIIADDYVDKEFGTGCVKITPAHDFNDYAVGQRHNLDK 312 Query: 378 DDILNPVMGDGRYASWLP-LFAGLTIWEASKPICDKLAEMGSLFKLVMFSHSYM--HCWR 434 IL D + P + G+ + A K I L G L +LV H M R Sbjct: 313 ISILTL---DAKINEHAPAAYQGMDRYAARKQIVADLDAQG-LLELVK-PHKLMVPRGDR 367 Query: 435 HKSPIIYRATSQWFASMDNTPKDG----GPSLRQTALQGIE--DTAFFPGWGKARLHGMI 488 + I T QWF +M +G G S+ + AL+ + + P + + Sbjct: 368 TNAVIEPMLTDQWFVAMSKPAPEGTHFPGKSITEVALEKVASGEVKLLPENWANTYNQWL 427 Query: 489 ANRPDWTLSRQRQWGVPMAFFVHKETGELHPRTPELIEQVAQRIEKSGIEAWQALDPKEL 548 N DW +SRQ WG + + E G+++ VA+ E++ +A Sbjct: 428 NNIQDWCISRQLWWGHQIPAWYDSE-GKVY---------VARNEEEARTKA--------- 468 Query: 549 LGADAEH--YVKNRDTLDVWFDSGTTHQTVLRGSHAQQSQF----PADLYLEGSDQHRGW 602 A H ++ D LD WF S + L G + F P+ + + G D W Sbjct: 469 -AAQGYHGPLTRDEDVLDTWFSSALVPFSTL-GWPEETPDFKNFLPSSVLVTGFDIIFFW 526 Query: 603 FHSSLLTSSMLNGRAPYKALLTHGFVVDGEGKKMSKSKGNVVAPQKVSDSL--------- 653 ++ ++ G+ P+ + HG + D G+KMSKSKGN + P + D + Sbjct: 527 VARMVMMTTHFTGKVPFNTVYVHGLIRDSSGQKMSKSKGNTLDPIDLIDGISVEDLVAKR 586 Query: 654 ----------------------------GAEILRLWVASTDYSGELSISDEILKRVVEAY 685 G + LR +AS G +I+ ++ + E Y Sbjct: 587 TVGLMNPKQAASIEKATRKEYPNGIAAYGTDALRFTMASYASLGR-NINFDLHR--CEGY 643 Query: 686 RRIRNTL----RFLLANTSDFDPTQHAVPVA--------------EMLEIDRYAIANMAR 727 R N L RF+L N D P A + + DR+ ++ + R Sbjct: 644 RNFCNKLWNATRFVLMNCEGQDCGFRDAPCAAGDCAVDGKAGGYTDFSQADRWIVSKLQR 703 Query: 728 LQAEVLAHFETYEFHPVVAKLQMYCSEDLGGFYLDILKDRLYTSGVESAARRSAQSAVWH 787 + ++ F Y F + + L + ++ +YL++ K ++ T G E A +R+ + + Sbjct: 704 TETDIAKGFADYRFDNIASSLYQFIWDEYCDWYLEVAKVQIQT-GTE-AQQRATRRTLLR 761 Query: 788 ITQSLLRLMAPILSFTAEEAWRYFASKEAYEA--SGETIFSQVY 829 + +++LRL P++ F E+ W+ A ++ +G++I Q Y Sbjct: 762 VLETILRLAHPVIPFITEQLWQTVAPLAGHKMHPAGDSIMMQPY 805 >gi|134095829|ref|YP_001100904.1| leucyl-tRNA synthetase [Herminiimonas arsenicoxydans] Length = 881 Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 53/127 (41%), Gaps = 10/127 (7%) Query: 75 PYANGDIHIGHAVNKILKDTIVKARNMAGFDAQYVPGWDCHGMPIEIQIEKQFGKNLPVA 134 PY +G +H+GH N + D + + M G++ GWD GMP E N+P A Sbjct: 48 PYPSGKLHMGHVRNYTINDVMYRYLRMNGYNVLMPMGWDAFGMPAE---NAAMANNVPPA 104 Query: 135 EVQAKARTYAGEQIERQKADFIRLGVLGEWDNPYKTMNFSNEADELRALGKILEKGYVYR 194 + TYA IE K +G+ +W K+LEKG +Y+ Sbjct: 105 Q-----WTYA--NIEHMKTQMASMGLAIDWSREMTACKPEYYKWNQWMFLKMLEKGIIYK 157 Query: 195 GLKPVNW 201 VNW Sbjct: 158 KTGSVNW 164 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.134 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,808,811 Number of extensions: 75766 Number of successful extensions: 206 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 200 Number of HSP's successfully gapped: 4 Length of query: 964 Length of database: 1,000,347 Length adjustment: 91 Effective length of query: 873 Effective length of database: 700,502 Effective search space: 611538246 Effective search space used: 611538246 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)