BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1215.p
         (171 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094084|ref|YP_001099159.1| lipoprotein signal peptidase [H...   240   4e-65
gi|134094761|ref|YP_001099836.1| prolipoprotein signal peptidase...   161   2e-41
gi|134094806|ref|YP_001099881.1| prolipoprotein signal peptidase...   149   5e-38
gi|134093782|ref|YP_001098857.1| prolipoprotein signal peptidase...   141   1e-35

>gi|134094084|ref|YP_001099159.1| lipoprotein signal peptidase
           [Herminiimonas arsenicoxydans]
          Length = 166

 Score =  240 bits (612), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 110/157 (70%), Positives = 134/157 (85%)

Query: 14  SSTQGLLPWLGIATIVLLLDQLSKITILKLFHYGESLPITGFFNLVLVYNKGAAFSFLAA 73
           S+  G+  WLGIA I+++LDQ++KI I   F YGE++P+T FFNLVLVYNKGAAFSFLA+
Sbjct: 5   STNTGIARWLGIAAILIILDQITKIAITSTFVYGEAMPVTPFFNLVLVYNKGAAFSFLAS 64

Query: 74  SGGWQRYLFTAIGIGAAIFIIHLLRRHPGQRMFCWALALILGGAIGNVIDRVVYGHVIDF 133
             GWQR+ FT IGIGA+ FII+LL+++ GQR+  WAL LILGGAIGNVIDR++YGHVIDF
Sbjct: 65  ETGWQRHFFTVIGIGASAFIIYLLKKNQGQRLLSWALTLILGGAIGNVIDRILYGHVIDF 124

Query: 134 LDVYVGNWHWPAFNLADSAICLGAVLFVVDELRRVSK 170
           LDVY+GNWHWPAFN+ADSAIC+GAVLFV DEL+R  K
Sbjct: 125 LDVYIGNWHWPAFNIADSAICIGAVLFVYDELKRSKK 161


>gi|134094761|ref|YP_001099836.1| prolipoprotein signal peptidase
           [Herminiimonas arsenicoxydans]
          Length = 174

 Score =  161 bits (407), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/149 (53%), Positives = 104/149 (69%), Gaps = 1/149 (0%)

Query: 22  WLGIATIVLLLDQLSKITILKLFHYGESLPITGFFNLVLVYNKGAAFSFLAASGGWQRYL 81
           W  +A +VL+LD  SK  I  L  YGE++P+TG+FNLV V+N GAAFSFLA SGGWQRY 
Sbjct: 21  WWSVAMMVLMLDVSSKAAISTLMAYGEAIPVTGYFNLVHVWNTGAAFSFLADSGGWQRYF 80

Query: 82  FTAIGIGAAIFIIHLLRRHPGQRMFCWALALILGGAIGNVIDRVVYGHVIDFLDVYVGNW 141
           F AI  G ++++   LR+ P   +  WA +LILGGA+GN IDR++ GHV+D+LD ++G W
Sbjct: 81  FIAIAFGVSLWLAFELRK-PLPALSAWAYSLILGGALGNAIDRLIRGHVVDYLDFHLGGW 139

Query: 142 HWPAFNLADSAICLGAVLFVVDELRRVSK 170
           HWPAFN AD  I  GA L V+  L  + +
Sbjct: 140 HWPAFNAADIGIVCGAALLVMASLHGIGE 168


>gi|134094806|ref|YP_001099881.1| prolipoprotein signal peptidase
           [Herminiimonas arsenicoxydans]
          Length = 190

 Score =  149 bits (377), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 75/145 (51%), Positives = 98/145 (67%), Gaps = 1/145 (0%)

Query: 22  WLGIATIVLLLDQLSKITILKLFHYGESLPITGFFNLVLVYNKGAAFSFLAASGGWQRYL 81
           W  +A IVL+LD  SK  I  L  YG S+P+TG+FNLV   N GAAFSFLA +GGWQRY 
Sbjct: 21  WWALAMIVLMLDVTSKAAISTLMTYGASIPLTGYFNLVHARNTGAAFSFLANAGGWQRYF 80

Query: 82  FTAIGIGAAIFIIHLLRRHPGQRMFCWALALILGGAIGNVIDRVVYGHVIDFLDVYVGNW 141
           F  +    ++++   LR+     +  WA +LILGGA+GN IDR++ G+V+D+LD +   W
Sbjct: 81  FITLAFVVSMWLALELRKQLPT-LSAWAYSLILGGALGNAIDRLLRGYVVDYLDFHWSGW 139

Query: 142 HWPAFNLADSAICLGAVLFVVDELR 166
           HWPAFN+AD  I  GAVL VV+ LR
Sbjct: 140 HWPAFNVADIGIVCGAVLLVVESLR 164


>gi|134093782|ref|YP_001098857.1| prolipoprotein signal peptidase
           [Herminiimonas arsenicoxydans]
          Length = 147

 Score =  141 bits (356), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 67/121 (55%), Positives = 88/121 (72%), Gaps = 1/121 (0%)

Query: 46  YGESLPITGFFNLVLVYNKGAAFSFLAASGGWQRYLFTAIGIGAAIFIIHLLRRHPGQRM 105
           YGES+P+TG+FNLV   N GAAFS LA +GGWQRY F  +  G ++++   LR+     +
Sbjct: 3   YGESIPLTGYFNLVHARNTGAAFSLLANAGGWQRYFFITLAFGVSMWLALELRKQL-PTL 61

Query: 106 FCWALALILGGAIGNVIDRVVYGHVIDFLDVYVGNWHWPAFNLADSAICLGAVLFVVDEL 165
             WA +LILGGA+GN IDR++ GHV+D+LD ++G+WHWPAFN AD  I  GAVL VV+ L
Sbjct: 62  SAWAYSLILGGALGNAIDRLLRGHVVDYLDFHLGSWHWPAFNAADIGIVCGAVLLVVESL 121

Query: 166 R 166
           R
Sbjct: 122 R 122


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.328    0.143    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 263,060
Number of extensions: 8845
Number of successful extensions: 45
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 4
Length of query: 171
Length of database: 1,000,347
Length adjustment: 75
Effective length of query: 96
Effective length of database: 753,222
Effective search space: 72309312
Effective search space used: 72309312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 125 (52.8 bits)