BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1214.p
         (398 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094083|ref|YP_001099158.1| bifunctional 4'-phosphopantothe...   609   e-176

>gi|134094083|ref|YP_001099158.1| bifunctional
           4'-phosphopantothenoylcysteine
           decarboxylase/phosphopantothenoylcysteine synthetase
           [Herminiimonas arsenicoxydans]
          Length = 396

 Score =  609 bits (1570), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 300/396 (75%), Positives = 340/396 (85%)

Query: 1   MDLAGKKIVLGLTGGVACYKAAMLARELGRAGASVHVVMTEGATHFMTAVTMQALTGNPV 60
           MDLAGKKI+LGLTGGVACYKAA L R L +AGA+V +VMT+ ATHF+T VTMQAL+GNPV
Sbjct: 1   MDLAGKKIILGLTGGVACYKAAELTRALSKAGATVQIVMTDAATHFITPVTMQALSGNPV 60

Query: 61  YTDQWDARMDNNMPHINLTRDADAVVIVPCSTDFIAKLAHGVCDDLLSTLCVARPARVPL 120
            TDQWDAR+ NNMPHI+LTRDADA+VI PCS DFI KLAHG CDDLLSTLCVARP  +PL
Sbjct: 61  VTDQWDARVANNMPHIDLTRDADAIVIAPCSADFIFKLAHGACDDLLSTLCVARPDTLPL 120

Query: 121 LVAPAMNVEMWQNPATQRNVRQIQEDGIVLLGPDAGAQACGEVGEGRMLEPAQLLEDIIA 180
           ++APAMNVEMWQNPAT+RNV Q++ D I + GPDAG QACGE G GRMLEP QLLE+IIA
Sbjct: 121 MIAPAMNVEMWQNPATKRNVAQVRADRIAVFGPDAGEQACGETGMGRMLEPEQLLEEIIA 180

Query: 181 AFQPKLLAGRRVLLTAGPTFEPIDPVRGITNLSSGKMGYAVARAAREAGAEVTLVSGPTA 240
           +FQP LL G+ V++TAGPTFEPIDPVRGITNLSSGKMGYA+ARAAREAGAEVTL+SGPTA
Sbjct: 181 SFQPNLLVGKSVMVTAGPTFEPIDPVRGITNLSSGKMGYAIARAAREAGAEVTLISGPTA 240

Query: 241 LETPYGVHRVDVQTAQQMYEAVMAHVKEKDLFVAVAAVADWRVANASAQKLKKQDQQDTP 300
           L  PYGVH ++VQTA QM++AVM+ +  + +F+AVAAVADWRV N SAQKLKK      P
Sbjct: 241 LAAPYGVHCINVQTAAQMHDAVMSRISSQHVFIAVAAVADWRVKNQSAQKLKKDAAGHAP 300

Query: 301 HLEFVQNPDILAAVAALPQRPYCVGFAAESENLEQYGAAKRIRKNIPLLVGNIGHQTFGR 360
            LEF QN DILAAVAAL +RPYCVGFAAESENL++YG AKR +KNIPLLVGNIGHQTFG+
Sbjct: 301 ALEFEQNTDILAAVAALEKRPYCVGFAAESENLQEYGEAKRKKKNIPLLVGNIGHQTFGQ 360

Query: 361 DDNALMLFDDQGHSALPQADKQTLARQLVREIARRM 396
           D N LMLFDDQGH+  P ADKQ LARQLV EIARR+
Sbjct: 361 DQNELMLFDDQGHTLFPLADKQKLARQLVGEIARRL 396


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.133    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 696,908
Number of extensions: 26295
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 314
Effective length of database: 723,567
Effective search space: 227200038
Effective search space used: 227200038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)