BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1212.p
         (363 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094081|ref|YP_001099156.1| hypothetical protein HEAR0841 [...   402   e-113

>gi|134094081|ref|YP_001099156.1| hypothetical protein HEAR0841
           [Herminiimonas arsenicoxydans]
          Length = 358

 Score =  402 bits (1034), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/363 (55%), Positives = 261/363 (71%), Gaps = 19/363 (5%)

Query: 5   PLPAWQKLKTLATLAPLAIL-AACATQEPGPAPATPSKPVTVTAPAPRPVV---DNPQQQ 60
           PL     LKT   L P+A+L A C+T             V++  PAPR  +   ++ Q Q
Sbjct: 11  PLRRAPSLKT--ALFPVALLLAGCST-------------VSLETPAPRVGITTSESSQLQ 55

Query: 61  QLRELINQQDRLYRVAAPLLTNNAQLCRGNARNLLGFTAKNKYSFPIEFADTARSLGYDD 120
            LR + +QQDRLYRVAAPLL +NA LC+G+ARNL+GF+AKNKYSF  ++ D A+SLG+D+
Sbjct: 56  TLRAITSQQDRLYRVAAPLLVSNAPLCKGHARNLIGFSAKNKYSFSEDYVDAAQSLGFDE 115

Query: 121 RLQVTGVLPGSGAEQAGIQRGDVLISVAGKPMPQGTDAERQAAVLLSPLVVKKAPIALGV 180
           RLQV GVL  SGA ++GI+RGD+L++V G  +PQG +AERQAA +L PLV K++ + L +
Sbjct: 116 RLQVMGVLNNSGAARSGIKRGDMLMTVEGTAIPQGPNAERQAAAMLGPLVSKRSSVKLSL 175

Query: 181 QRNGQNSVVNVPLTYACAFSIELGNADNVNTYADGRRVLITRGMLKFTQSDDELAYLIAK 240
            RNG N+   VPLT AC F IELGN DNVN YADGRRVL+TRGML F ++D ELAY++AK
Sbjct: 176 LRNGTNTSATVPLTLACGFGIELGNVDNVNAYADGRRVLLTRGMLNFVRNDTELAYVLAK 235

Query: 241 DMAHNILGHAIRQRMVSTIAEVIDNLLLPHPDPTTTAGTAGIRVYPQDLDAAADTLSLYL 300
           ++AHN LGH  RQRM +T   +IDNL+   PD +T  G+ G+   PQ+LDAAADTL+LY+
Sbjct: 236 ELAHNALGHPTRQRMNATAGGIIDNLIRIAPDTSTLGGSGGMLATPQELDAAADTLALYM 295

Query: 301 LARAGYNIDNVPAFWKRLADQYPASVPNGYTALHPSTAYRLAMIEKVTQIVKAKQEAGKP 360
           L RAGYNID   AFW+RLA QYPA+V N YTA+HP+T+YRLA IEK +  +K K  A + 
Sbjct: 296 LVRAGYNIDGAAAFWQRLATQYPATVLNAYTAIHPATSYRLAAIEKTSAEIKGKLAAKRS 355

Query: 361 LVP 363
           L+P
Sbjct: 356 LLP 358


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 635,905
Number of extensions: 25725
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 280
Effective length of database: 726,862
Effective search space: 203521360
Effective search space used: 203521360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)