BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1211.p (767 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095621|ref|YP_001100696.1| clpA-clpP serine protease ATP-d... 1444 0.0 gi|134095329|ref|YP_001100404.1| ATP-dependent protease Hsp 100 ... 311 6e-86 >gi|134095621|ref|YP_001100696.1| clpA-clpP serine protease ATP-dependent specificity subunit [Herminiimonas arsenicoxydans] Length = 767 Score = 1444 bits (3737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 702/768 (91%), Positives = 739/768 (96%), Gaps = 2/768 (0%) Query: 1 MIAQELEVSLHMAFVEARQSRHEFITVEHLLLALLDNPSAAEVLRACSVNIDDLRKTLTN 60 MIAQELEVSLHMAFVEARQ+RHEFITVEHLLLALLDNPSAAEVLRAC+VNIDDLRKTLTN Sbjct: 1 MIAQELEVSLHMAFVEARQARHEFITVEHLLLALLDNPSAAEVLRACAVNIDDLRKTLTN 60 Query: 61 FITDNTPTVPGTNEVDTQPTLGFQRVIQRAIMHVQSASNGKKEVTGANVLVAIFGEKDSH 120 FI DNTPTVPG EVDTQPTLGFQRVIQRAIMHVQSASNGKKEVTGANVLVAIFGEKDSH Sbjct: 61 FIGDNTPTVPGAAEVDTQPTLGFQRVIQRAIMHVQSASNGKKEVTGANVLVAIFGEKDSH 120 Query: 121 AVYYLHQQGVTRLDVVNFISHGVRKDQQTDPQKAPEGAEDV-QAEGQQKESPLDQFTQNL 179 AVYYLHQQGVTRLDVVNFISHGVRKDQQ D QK+ EGAED A+GQQKES LDQFTQNL Sbjct: 121 AVYYLHQQGVTRLDVVNFISHGVRKDQQIDVQKSSEGAEDAPSADGQQKESALDQFTQNL 180 Query: 180 NKAAAEGKIDPLIGRESEVERVIQTLCRRRKNNPLLVGEAGVGKTAIAEGLAWRVTQGDV 239 NK A EGKIDPLIGRE EVERVIQTLCRRRKNNPLLVGEAGVGKTAIAEGLAWR+TQG+V Sbjct: 181 NKLATEGKIDPLIGREGEVERVIQTLCRRRKNNPLLVGEAGVGKTAIAEGLAWRITQGEV 240 Query: 240 PEILKNAVVYSLDMGALLAGTKYRGDFEQRLKAVLKQLKDSPNGILFIDEIHTIIGAGSA 299 PE+L+NAVVYSLDMGALLAGTKYRGDFEQRLKAVLKQLKD+PNGILFIDEIHTIIGAGSA Sbjct: 241 PEVLQNAVVYSLDMGALLAGTKYRGDFEQRLKAVLKQLKDNPNGILFIDEIHTIIGAGSA 300 Query: 300 SGGTLDASNLLKPALSSGQLKCIGATTYTEFRGVFEKDHALSRRFQKIDVNEPTVEQTVQ 359 SGGTLDASNLLKPALS+GQLKCIGATT+TEFRGVFEKDHALSRRFQKIDVNEPTVEQT+Q Sbjct: 301 SGGTLDASNLLKPALSNGQLKCIGATTFTEFRGVFEKDHALSRRFQKIDVNEPTVEQTIQ 360 Query: 360 ILRGLKSKFEEHHGVKYSASALTSAAELAARFINDRHLPDKAIDVIDEAGAAQRILPKSK 419 ILRGLKS+FEEHHGVKYS+SAL SAAELAARFINDRHLPDKAIDVIDEAGAAQRILPKSK Sbjct: 361 ILRGLKSRFEEHHGVKYSSSALVSAAELAARFINDRHLPDKAIDVIDEAGAAQRILPKSK 420 Query: 420 QKKTIGKPEIEEIISKIARIPPQSVNQDDRAKLQTIERDLKNVVFGQDPAIEALASAIKM 479 QKKTIGK EIE+IISKIARIP Q+VNQDDR+KLQTIERDLKNVVFGQDPA+EAL SAIK+ Sbjct: 421 QKKTIGKAEIEDIISKIARIPAQTVNQDDRSKLQTIERDLKNVVFGQDPALEALGSAIKV 480 Query: 480 ARAGLGKTDKPIGSFLFSGPTGVGKTEVAKQLAFILGIELVRFDMSEYMERHAVSRLIGA 539 ARAGLGKTDKPIGSFLFSGPTGVGKTE AKQLAFI+GIEL+RFDMSEYMERHAVSRLIGA Sbjct: 481 ARAGLGKTDKPIGSFLFSGPTGVGKTEAAKQLAFIMGIELIRFDMSEYMERHAVSRLIGA 540 Query: 540 PPGYVGFDQGGLLTEAVNKKPHAVLLLDEIEKAHPDIFNILLQVMDHGTLTDNNGRKTDF 599 PPGYVGFDQGGLLTEA+ KKPHAVLLLDEIEKAHPDIFNILLQVMDHGTLTDNNGRK DF Sbjct: 541 PPGYVGFDQGGLLTEAITKKPHAVLLLDEIEKAHPDIFNILLQVMDHGTLTDNNGRKADF 600 Query: 600 RNVIIIMTTNAGAESLQKRTIGFTEKKEAGDEMADIKRMFTPEFRNRLDAIISFRPLDEE 659 RNVIIIMTTNAGAESLQKR+IGFT+KKEAGDEMADIKRMFTPEFRNRLDAIISFR LDEE Sbjct: 601 RNVIIIMTTNAGAESLQKRSIGFTDKKEAGDEMADIKRMFTPEFRNRLDAIISFRALDEE 660 Query: 660 IILRVVDKFLMQLEEQLHEKKVEAVFSDSLRKFLGKKGFDPLMGARPMSRLIQDLIRKAL 719 IILRVVDKFLMQLEEQLHEKKVEA+F+D+LR FL KKGFDPLMGARPMSRLIQD+IRKAL Sbjct: 661 IILRVVDKFLMQLEEQLHEKKVEAIFTDNLRTFLAKKGFDPLMGARPMSRLIQDMIRKAL 720 Query: 720 ADELLFGKLVSGGRVTVEMDDKDQIKLDFPEGDDSSPPEEPQEKLEVE 767 ADELLFG+LV+GG+VTV++D+KDQIKLDF EG D++PP QE +EVE Sbjct: 721 ADELLFGRLVTGGKVTVDLDEKDQIKLDFSEG-DTAPPTAAQETIEVE 767 >gi|134095329|ref|YP_001100404.1| ATP-dependent protease Hsp 100 [Herminiimonas arsenicoxydans] Length = 860 Score = 311 bits (798), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 182/406 (44%), Positives = 250/406 (61%), Gaps = 31/406 (7%) Query: 22 HEFITVEHLLLALL--DNPSAAEVLRACSVNIDDLRKTLTNFITDNTPTVPGTNEVDTQP 79 +++I H+L+ALL D+ S +L+ NI+ + L + + + P V GT Sbjct: 26 NQYIEPVHVLVALLSQDDSSTRSLLQRAGANINGMVTALKSAL-ERLPKVSGT------- 77 Query: 80 TLGFQRVIQRAIMHVQSASNGKKEVTG-----ANVLVAIFGEKDSHAVYYLHQQGVTRLD 134 G Q I R + + + ++ + ++ G +L+ E S A + G+TR Sbjct: 78 --GGQVQISRDLTALLNLADKESQMHGDEFIATEMLLLALTEDKSEAGKIARENGLTRKA 135 Query: 135 VVNFISHGVRKDQQTDPQKAPEGAEDVQAEGQQKESPLDQFTQNLNKAAAEGKIDPLIGR 194 + I VR + D AEG+ + L ++T +L + A GK+DP+IGR Sbjct: 136 LQAAIK-AVRGSSKVD-----------SAEGEGQREALKKYTMDLTERARIGKLDPVIGR 183 Query: 195 ESEVERVIQTLCRRRKNNPLLVGEAGVGKTAIAEGLAWRVTQGDVPEILKNAVVYSLDMG 254 + E+ R IQ L RR KNNP+L+GE GVGKTAI EGLA R+ G+VPE LK V SLDM Sbjct: 184 DDEIRRTIQILQRRSKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPESLKGKRVLSLDMA 243 Query: 255 ALLAGTKYRGDFEQRLKAVLKQL-KDSPNGILFIDEIHTIIGAGSASGGTLDASNLLKPA 313 +LLAG KYRG+FE+RLKAVL +L +D I+FIDE+HT++GAG A G +DA N+LKPA Sbjct: 244 SLLAGAKYRGEFEERLKAVLTELAEDEGQTIVFIDEMHTLVGAGKAEGA-MDAGNMLKPA 302 Query: 314 LSSGQLKCIGATTYTEFRGVFEKDHALSRRFQKIDVNEPTVEQTVQILRGLKSKFEEHHG 373 L+ G+L C+GATT E+R EKD AL RRFQK+ V+EPTVE T+ ILRGL+ K+E HHG Sbjct: 303 LARGELHCVGATTLDEYRKYIEKDAALERRFQKVLVDEPTVEATIAILRGLQEKYEVHHG 362 Query: 374 VKYSASALTSAAELAARFINDRHLPDKAIDVIDEAGAAQRILPKSK 419 V + A+ +AAEL+ R+I DR LPDKAID+IDEA A +I SK Sbjct: 363 VDITDPAIVAAAELSHRYITDRFLPDKAIDLIDEAAAKIKIEIDSK 408 Score = 282 bits (721), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 148/319 (46%), Positives = 203/319 (63%), Gaps = 20/319 (6%) Query: 421 KKTIGKPEIEEIISKIARIPPQSVNQDDRAKLQTIERDLKNVVFGQDPAIEALASAIKMA 480 + +G EI E++S+ IP + Q +R KL +E L V GQ AI A++ AI+ + Sbjct: 530 RTQVGAEEIAEVVSRATGIPVSRMMQGEREKLLQMEDALHKRVVGQHEAIVAVSDAIRRS 589 Query: 481 RAGLGKTDKPIGSFLFSGPTGVGKTEVAKQLA-FILGIE--LVRFDMSEYMERHAVSRLI 537 RAGLG D+P GSF+F GPTGVGKTE+ K LA F+ E LVR DMSE+ME+H+V+RLI Sbjct: 590 RAGLGDPDRPYGSFMFLGPTGVGKTELCKALASFLFDTEDSLVRIDMSEFMEKHSVARLI 649 Query: 538 GAPPGYVGFDQGGLLTEAVNKKPHAVLLLDEIEKAHPDIFNILLQVMDHGTLTDNNGRKT 597 GAPPGYVG+++GG LTEAV +KP+ V+LLDEIEKAHPD+FN+LLQV+D G +TD GR Sbjct: 650 GAPPGYVGYEEGGYLTEAVRRKPYCVILLDEIEKAHPDVFNVLLQVLDDGRMTDGQGRTV 709 Query: 598 DFRNVIIIMTTNAGAESLQKRTIGFTEKKEAGDE--------MADIKRMFTPEFRNRLDA 649 DF+N +I+MT+N G+ +Q G+E MA+++ F PEF NR+D Sbjct: 710 DFKNTVIVMTSNLGSHKIQAME---------GNEPALIKMAVMAEVQSHFRPEFINRIDE 760 Query: 650 IISFRPLDEEIILRVVDKFLMQLEEQLHEKKVEAVFSDSLRKFLGKKGFDPLMGARPMSR 709 I+ F LDE+ I + L LE++L + S+ + + + GFDP+ GARP+ R Sbjct: 761 IVVFHALDEKNIGAIAKIQLHTLEQRLARMDMSMDVSEDALQKIAEAGFDPVYGARPLKR 820 Query: 710 LIQDLIRKALADELLFGKL 728 IQ I L+ +L GK Sbjct: 821 AIQQQIENPLSKAILEGKF 839 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.317 0.135 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,368,422 Number of extensions: 57499 Number of successful extensions: 223 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 220 Number of HSP's successfully gapped: 3 Length of query: 767 Length of database: 1,000,347 Length adjustment: 89 Effective length of query: 678 Effective length of database: 707,092 Effective search space: 479408376 Effective search space used: 479408376 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)