BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1209.p
         (68 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095623|ref|YP_001100698.1| RNA chaperone [Herminiimonas ar...   132   5e-33
gi|134095543|ref|YP_001100618.1| cold shock DNA -binding domain-...   124   9e-31
gi|134094972|ref|YP_001100047.1| RNA chaperone [Herminiimonas ar...   115   5e-28

>gi|134095623|ref|YP_001100698.1| RNA chaperone [Herminiimonas
          arsenicoxydans]
          Length = 67

 Score =  132 bits (331), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 64/65 (98%), Positives = 65/65 (100%)

Query: 1  MATGTVKWFNDSKGFGFITPDDGGEDLFAHFSAIQMNGFKTLKEGQKVQFDVTQGPKGKQ 60
          MATGTVKWFNDSKGFGFITPDDGGEDLFAHFSAIQMNGFKTLKEGQKVQF+VTQGPKGKQ
Sbjct: 1  MATGTVKWFNDSKGFGFITPDDGGEDLFAHFSAIQMNGFKTLKEGQKVQFEVTQGPKGKQ 60

Query: 61 ASNIQ 65
          ASNIQ
Sbjct: 61 ASNIQ 65


>gi|134095543|ref|YP_001100618.1| cold shock DNA -binding
          domain-containing protein [Herminiimonas
          arsenicoxydans]
          Length = 67

 Score =  124 bits (311), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 60/67 (89%), Positives = 62/67 (92%)

Query: 1  MATGTVKWFNDSKGFGFITPDDGGEDLFAHFSAIQMNGFKTLKEGQKVQFDVTQGPKGKQ 60
          M TGTVKWFNDSKGFGFITPD GGEDLFAHFSAI M GFKTLKEGQKV F+VTQGPKGKQ
Sbjct: 1  MQTGTVKWFNDSKGFGFITPDSGGEDLFAHFSAITMEGFKTLKEGQKVSFEVTQGPKGKQ 60

Query: 61 ASNIQNA 67
          ASNI+NA
Sbjct: 61 ASNIKNA 67


>gi|134094972|ref|YP_001100047.1| RNA chaperone [Herminiimonas
          arsenicoxydans]
          Length = 67

 Score =  115 bits (287), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 54/65 (83%), Positives = 60/65 (92%)

Query: 1  MATGTVKWFNDSKGFGFITPDDGGEDLFAHFSAIQMNGFKTLKEGQKVQFDVTQGPKGKQ 60
          MATG VKWFNDSKGFGFITPD+GGEDLFAHFSAIQ +GFK+L+E Q+V F+VT GPKGKQ
Sbjct: 1  MATGIVKWFNDSKGFGFITPDEGGEDLFAHFSAIQSSGFKSLQENQRVSFEVTAGPKGKQ 60

Query: 61 ASNIQ 65
          ASNIQ
Sbjct: 61 ASNIQ 65


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 134,152
Number of extensions: 4322
Number of successful extensions: 7
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 3
Length of query: 68
Length of database: 1,000,347
Length adjustment: 39
Effective length of query: 29
Effective length of database: 871,842
Effective search space: 25283418
Effective search space used: 25283418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 121 (51.2 bits)