BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1203.p
         (285 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095628|ref|YP_001100703.1| hypothetical protein HEAR2453 [...   381   e-107

>gi|134095628|ref|YP_001100703.1| hypothetical protein HEAR2453
           [Herminiimonas arsenicoxydans]
          Length = 279

 Score =  381 bits (979), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 183/280 (65%), Positives = 234/280 (83%), Gaps = 3/280 (1%)

Query: 4   MTLTSLDYFASLVRQDDSIPLFESALTLGQDFYPEMDFAEEEMALDNLAAKLKQRLPSDA 63
           MT+ +L+YF++LV+QDDSIPLFE+AL + QD  P +D A  E  +D LAAKLKQRLP DA
Sbjct: 1   MTIKTLEYFSTLVQQDDSIPLFEAALAIAQDAEPGLDLAALEEEVDTLAAKLKQRLPDDA 60

Query: 64  SQIQKLRMLNHFFFQEMAFAGNVNNYYDPDNSYIHRVISTRRGIPISLAVVYIELAQHIG 123
           S +QKLRMLNH+F+ E+ F+GNVN+YY+PDNSY+HRV+STRRGIPISLA++Y+ELAQ I 
Sbjct: 61  SHLQKLRMLNHYFYNELGFSGNVNDYYNPDNSYLHRVLSTRRGIPISLAILYMELAQQID 120

Query: 124 LDMKGVSFPGHFLMKLSVQSGEIVLDPMNGASLSRQELEERLEPFLAHHPEEDFGDELPL 183
           L+++GVSFPGHFLMKLSVQSG++VLDP NG+SLSR+ELEER+EP++    E+DF D+   
Sbjct: 121 LEVQGVSFPGHFLMKLSVQSGQVVLDPFNGSSLSREELEERVEPYIL---EQDFPDDFQF 177

Query: 184 AAYLRAAHPREILARMLRNLKAIFMESQRWQQVLDVQERLVILLPEEITEKRDRGLAYAN 243
            AYL AA PR+IL RMLRNLK +FM+ + WQ++L+VQERL+ILLP +ITE+RDRGLAYAN
Sbjct: 178 NAYLDAASPRDILVRMLRNLKLLFMQQEHWQRLLEVQERLLILLPRDITERRDRGLAYAN 237

Query: 244 LGQAQAALEDLEAYLALRPHAEDAPNLREMLPDLREALRK 283
           L   QAAL+D+EAYL  RP+A DA  LR  LPDL++A+ +
Sbjct: 238 LECPQAALQDIEAYLEQRPYAMDAAELRARLPDLKDAIGR 277


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 480,497
Number of extensions: 17209
Number of successful extensions: 52
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 204
Effective length of database: 733,452
Effective search space: 149624208
Effective search space used: 149624208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)