BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1201.p (824 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094841|ref|YP_001099916.1| murein polymerase, bifunctional... 857 0.0 gi|134096281|ref|YP_001101356.1| murein polymerase, bifunctional... 818 0.0 gi|134095915|ref|YP_001100990.1| monofunctional biosynthetic pep... 97 2e-21 >gi|134094841|ref|YP_001099916.1| murein polymerase, bifunctional murein transglycosylase and transpeptidase; penicillin-binding protein PBP1A; dimeric (Mca like) [Herminiimonas arsenicoxydans] Length = 837 Score = 857 bits (2214), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/760 (55%), Positives = 560/760 (73%), Gaps = 10/760 (1%) Query: 26 LSILGLGVAGALLVVYALIFINPRLPSLDLITDYRPKVPLRIWSADKVLLGEFGEEKRSL 85 ++++ A LLV Y +F+ P LPS+D +TDYRPK+PLR+++AD VL+GEFGEE+R Sbjct: 44 VAVIASFCAALLLVAYTFLFVAPNLPSIDALTDYRPKIPLRVYTADNVLIGEFGEERRDF 103 Query: 86 VKLDDIPADMKNAVLAIEDYRFYEHGGIDWIGIARALVTDVLRGSASQGASTITMQVARN 145 V + +IP+ MKNA++AIED FYEHGG+D +G+ RA + +++R S SQGASTITMQVAR Sbjct: 104 VSIGEIPSSMKNAIIAIEDNNFYEHGGVDLLGVVRAGLANIVR-SRSQGASTITMQVART 162 Query: 146 VFLTKEKTLSRKLYEVLLANKIEHALTKDQILEVYMNQIYLGQRAFGFAAAARTYFGKDL 205 LT++KT SRKL EVLLA +IE LTKDQILE+YMNQIYLGQRA+GF +AAR YFGK + Sbjct: 163 FLLTRKKTYSRKLQEVLLAYRIEQNLTKDQILELYMNQIYLGQRAYGFGSAARIYFGKPI 222 Query: 206 KDITLAEAAMLAGLPKAPSAYNPIVNPKRAHIRQQYILQRMLDVGFITQAQYDKASKEEL 265 KD+++AEAAMLAG+PKAP++ NP+VNPKRA RQQYIL+RM ++ FITQAQY+KA+ E+L Sbjct: 223 KDLSIAEAAMLAGIPKAPASANPVVNPKRATERQQYILKRMHELNFITQAQYEKAAAEQL 282 Query: 266 KVRAPGSQYTVHAEYVNEMVRQMVYAQYKEDTYTQGFNVYTTVNAADQQAAYQAVRKGVM 325 V A G+++ HAEY E VRQ +Y+QYK+D YT G +VYTT+ ADQ AAY+AVR+GV+ Sbjct: 283 HVLADGNRFRTHAEYAAEQVRQFMYSQYKDDIYTSGMSVYTTLIKADQDAAYEAVRRGVL 342 Query: 326 DYDRRHGYRGPEETIELPANAEDRASAIDDVMDDHPDNDDILAAVVVAANPKQIDAVLRS 385 DYD+RHGYRGPE I+LP + EDR AI++++ HPD+DD+ AAVV A + K + AV + Sbjct: 343 DYDKRHGYRGPEAWIDLPKDEEDRQQAIEEILVKHPDSDDLKAAVVTAVSAKSVTAVTLA 402 Query: 386 GDKISIKGEALRFVAAALSEKAKKDIRIAPGALIRVMQDAKQNWQVVQLPQVEAALVSVV 445 D+I I GE LRF AA+LS KA + +I PG++IRV+QD+K+ W + QLP+V AA V+V Sbjct: 403 DDEIEISGEGLRFAAASLSAKAVEAKKIKPGSVIRVLQDSKKKWGIAQLPEVAAAFVAVN 462 Query: 446 PQDGAIRALVGGFDFTQNNFNHVTQAWRQPGSTFKPFIYSAALEKGFAPASIVNDAPVSY 505 QDG IRA+VGGFDF N F+HVTQAWRQPGST KPF+YSAALEKGF+P +++NDAP++ Sbjct: 463 AQDGGIRAMVGGFDFALNQFDHVTQAWRQPGSTIKPFVYSAALEKGFSPGTLINDAPLAE 522 Query: 506 --PAGPGQPNWEPKDDETP-AGPMTVRTALQKSVNLVAIRTLDYIGVPYARDFITGTYGF 562 P G W P +D + GP+T+RT L+KS NLV+IR L I PYA + +T +GF Sbjct: 523 DNPGEQGGKAWNPGNDNSQYDGPVTMRTGLKKSKNLVSIRILRKITPPYAIEHLT-HFGF 581 Query: 563 DTDKVPPYLPMALGAGQTNPLQLSAAYSVFANGGYKIQPYLISQITDARGKVLSKADPLI 622 D DK P L +ALG G PLQ++ AY+VFANGG+K+ PYLI ++ D RGKVL +A+ Sbjct: 582 DADKQPDNLTLALGTGSVTPLQMAGAYTVFANGGFKLAPYLIQKVVDVRGKVLLEANHPQ 641 Query: 623 VGNGAPRVVAERNSYIMTNLLRSVAQAGTGARS-NSIGRTDLAGKTGTTNDAVDGWFAGY 681 G+ R + RN++IM +LR V ++GTG + +GR+DLAGKTGTTNDA+DGWFAGY Sbjct: 642 AGDETARAIDPRNAFIMNTMLRDVVRSGTGYMAGQRLGRSDLAGKTGTTNDAMDGWFAGY 701 Query: 682 QHTLATVAWMGYDQPKSLGSKEFGAQLALPIWVDYMAKALKGVPQFDQPVPDGIRFIDGE 741 + VAWMGYD+P++LG++EFG+ LALPIWVDYM AL+G + VP G+ DG+ Sbjct: 702 GRDMVAVAWMGYDKPRTLGNREFGSTLALPIWVDYMRTALRGKAEIQNAVPAGLTQADGD 761 Query: 742 PYYDNFTPNNGLVTNVGVTAGDALANFFGWTTNQTPATPA 781 YD + + V +V + D F+ N P PA Sbjct: 762 WMYDEYAHGDA-VRSVDI---DEQKGFWEKLFNPGPEQPA 797 >gi|134096281|ref|YP_001101356.1| murein polymerase, bifunctional murein transglycosylase and transpeptidase; penicillin-binding protein PBP1A; dimeric [Herminiimonas arsenicoxydans] Length = 683 Score = 818 bits (2114), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/669 (59%), Positives = 519/669 (77%), Gaps = 8/669 (1%) Query: 95 MKNAVLAIEDYRFYEHGGIDWIGIARALVTDVLRGSASQGASTITMQVARNVFLTKEKTL 154 MK AVLAIED RF+EHGG+D++GI RA V + L G A QGASTIT QVARN FL+ E+TL Sbjct: 1 MKKAVLAIEDDRFFEHGGVDYVGIVRAAVHN-LSGGARQGASTITQQVARNFFLSSEQTL 59 Query: 155 SRKLYEVLLANKIEHALTKDQILEVYMNQIYLGQRAFGFAAAARTYFGKDLKDITLAEAA 214 RK+YEVLLA KIE L+KDQILEVYMNQIYLGQRA+GF++AA+ Y+GK L++IT+AEAA Sbjct: 60 KRKIYEVLLAWKIEKNLSKDQILEVYMNQIYLGQRAYGFSSAAQIYYGKKLQNITIAEAA 119 Query: 215 MLAGLPKAPSAYNPIVNPKRAHIRQQYILQRMLDVGFITQAQYDKASKEELKVRAPGSQY 274 MLAGLPKAPSAYNP+VNPKRA RQQYILQRM +G+I++A++++A EELK++ S++ Sbjct: 120 MLAGLPKAPSAYNPVVNPKRARARQQYILQRMRQLGYISEAEFNQAKDEELKIKTNSSEF 179 Query: 275 TVHAEYVNEMVRQMVYAQYKEDTYTQGFNVYTTVNAADQQAAYQAVRKGVMDYDRRHGYR 334 VHAEYV EM RQ+VY Q+KE+TYT+G NV+TT+ ADQ AAY AVRKGVMDY++RHGYR Sbjct: 180 GVHAEYVAEMTRQLVYDQFKEETYTRGLNVFTTITKADQDAAYLAVRKGVMDYEKRHGYR 239 Query: 335 GPEETIELPANAEDRASAIDDVMDDHPDNDDILAAVVVAANPKQIDAVLRSGDKISIKGE 394 GPE IE+P N E+ AI+ + HPD+DD++AAVV+ A P+ + AVL SG++I I+G Sbjct: 240 GPENYIEIPDNKEEAEDAIEVELASHPDSDDLVAAVVLDATPQLVTAVLVSGEEIKIEGA 299 Query: 395 ALRFVAAALSEKAKKDIRIAPGALIRVMQDAKQNWQVVQLPQVEAALVSVVPQDGAIRAL 454 L F A LS KA + RI GA+IRVMQ+ K NW V+Q+P+V++A V+ DGAIRAL Sbjct: 300 GLTFAANLLSAKAPPNKRIKRGAVIRVMQEGK-NWSVIQMPEVQSAFVAANTDDGAIRAL 358 Query: 455 VGGFDFTQNNFNHVTQAWRQPGSTFKPFIYSAALEKGFAPASIVNDAPVSYPAGP--GQP 512 VGGFDF +N FNHVTQAWRQPGS+FKPFIYSA+LEKG +P++I+NDAP+S+ AG GQP Sbjct: 359 VGGFDFNRNKFNHVTQAWRQPGSSFKPFIYSASLEKGLSPSTIINDAPISFDAGQTGGQP 418 Query: 513 NWEPKD-DETPAGPMTVRTALQKSVNLVAIRTLDYIGVPYARDFITGTYGFDTDKVPPYL 571 WEPK+ D GPMT+R L KS N+++IR L IG Y +++IT +GFD DK PPYL Sbjct: 419 -WEPKNYDGKYDGPMTMRRGLTKSKNMISIRILHKIGAKYGQEYIT-RFGFDADKNPPYL 476 Query: 572 PMALGAGQTNPLQLSAAYSVFANGGYKIQPYLISQITDARGKVLSKADPLIVGNGAPRVV 631 +ALGAG PLQ++A ++VFANGGYKI PYLI++ITDA GK LS+ +P+ G+ A RV+ Sbjct: 477 TLALGAGAVTPLQMAAGFAVFANGGYKINPYLITKITDASGKPLSEVNPVKAGDEANRVI 536 Query: 632 AERNSYIMTNLLRSVAQAGTGARSNSIGRTDLAGKTGTTNDAVDGWFAGYQHTLATVAWM 691 RN+++M ++L+ V +GT ++ ++ RTDLAGKTGTTND+ D WFAGY + +AW+ Sbjct: 537 DARNAFLMDSMLKDVVTSGTAVKAMALKRTDLAGKTGTTNDSFDAWFAGYHPEIVGIAWI 596 Query: 692 GYDQPKSLGSKEFGAQLALPIWVDYMAKALKGVPQFDQPVPDGIRFIDGEPYYDNFTPNN 751 G+DQPK+LG++E G LALPIW++YM KALK VP ++ VP+GI +G+ +Y P Sbjct: 597 GFDQPKNLGNRETGGGLALPIWINYMQKALKNVPTVERTVPEGIITANGDYFYAENPPGL 656 Query: 752 GLVTNVGVT 760 G V N+G++ Sbjct: 657 G-VRNLGLS 664 >gi|134095915|ref|YP_001100990.1| monofunctional biosynthetic peptidoglycan transglycosylase [Herminiimonas arsenicoxydans] Length = 231 Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 89/165 (53%) Query: 82 KRSLVKLDDIPADMKNAVLAIEDYRFYEHGGIDWIGIARALVTDVLRGSASQGASTITMQ 141 K V I ++K A++A ED F H GIDW + +A +V +G G STIT Q Sbjct: 61 KHKWVPYKRISNNLKRAIIASEDSNFSGHEGIDWDALEKAYEKNVRKGKVVAGGSTITQQ 120 Query: 142 VARNVFLTKEKTLSRKLYEVLLANKIEHALTKDQILEVYMNQIYLGQRAFGFAAAARTYF 201 +A+N+FL+ +++ RK EV++ +E+ + K++I E+Y+N + G FG AAA+ Y+ Sbjct: 121 LAKNLFLSGDRSYIRKGQEVVITYMLEYWMDKERIFEIYLNVVEWGVGVFGAEAAAQHYY 180 Query: 202 GKDLKDITLAEAAMLAGLPKAPSAYNPIVNPKRAHIRQQYILQRM 246 G ++ +AA LA + P Y+ R IL+RM Sbjct: 181 GTSAAQLSAPQAARLAVMLPNPRFYDTHRGTAYLGRRTDLILRRM 225 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.317 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,454,593 Number of extensions: 59233 Number of successful extensions: 168 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 160 Number of HSP's successfully gapped: 3 Length of query: 824 Length of database: 1,000,347 Length adjustment: 90 Effective length of query: 734 Effective length of database: 703,797 Effective search space: 516586998 Effective search space used: 516586998 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)