BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1200.p
         (251 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095985|ref|YP_001101060.1| cytochrome C bihemic c4 family ...   258   2e-70
gi|134096289|ref|YP_001101364.1| cytochrome c4 [Herminiimonas ar...    90   1e-19
gi|134094040|ref|YP_001099115.1| putative cytochrome c [Herminii...    54   5e-09

>gi|134095985|ref|YP_001101060.1| cytochrome C bihemic c4 family
           protein [Herminiimonas arsenicoxydans]
          Length = 238

 Score =  258 bits (658), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 120/230 (52%), Positives = 162/230 (70%), Gaps = 2/230 (0%)

Query: 12  TTAALGTMLAASLALAQEPAGEARVVPGMSERVAACIACHGQQGRATADGYYPRIAGKPE 71
           T+  +   +  S   A   AG  ++   +++RVAAC+ CHG++GRA +DGYYPRIAGKP 
Sbjct: 10  TSIIISCFMPGSAGAANVDAG--KIPDTIAQRVAACVVCHGKEGRAGSDGYYPRIAGKPA 67

Query: 72  GYLLHQLQSFRDGRRRYPMMNYLLGNLSDAYLQQIAAFFAAQHPPYPPPVAADASAAVLE 131
           GYL +QL +FRDG+R YP+M  +L N+SDAYL++IA +F+ QHPPYP P    ++ A LE
Sbjct: 68  GYLYNQLINFRDGKRTYPVMTAMLENMSDAYLREIAQYFSDQHPPYPEPQPTQSNPAELE 127

Query: 132 RGRLLVHQGRPAQGIPACAACHGAELAGVQPGIPGLLGLPRDYLTAQLGAWRNGERTAKA 191
           RGR+LVH G  A+GIPAC ACH A++ G  P IPGL+GLPRDYL  Q+GAW+ G R A A
Sbjct: 128 RGRVLVHDGDKAKGIPACVACHSAKMTGTAPAIPGLVGLPRDYLLGQIGAWKIGTRHAAA 187

Query: 192 PDCMGQIARALSPEDLHAVSSWLSSQPVPPTYAPAATLPQALPVQCGSMS 241
           PDCM +I + +S  D+ AV++WLS Q VP   +PA  L   LP++CG ++
Sbjct: 188 PDCMAEIVKKMSATDISAVTAWLSGQRVPADASPAPALKTRLPLECGKLA 237


>gi|134096289|ref|YP_001101364.1| cytochrome c4 [Herminiimonas
           arsenicoxydans]
          Length = 221

 Score = 89.7 bits (221), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 100/193 (51%), Gaps = 10/193 (5%)

Query: 25  ALAQEPA-GEARVVPGMSER-VAACIACHGQQGRATADGYYPRIAGKPEGYLLHQLQSFR 82
           A+  +PA GEA    G + R V ACIACHG  G ++     P+++G+   Y+  QL  F+
Sbjct: 34  AVKADPAKGEALYNTGDASRNVIACIACHGAAGNSSI-AENPKLSGQHGAYIHKQLLDFK 92

Query: 83  DGRRRYPMMNYLLGNLSDAYLQQIAAFFAAQHPPYPPPVAADASAAVLERGRLLVHQGRP 142
            G R   +M  +   +++  ++ + A+        P P AA     V E G+ +   G  
Sbjct: 93  SGARNNAIMGPIAKGMTEEDIRNLIAYM---DKSKPTPGAARNKDTV-ELGKHIFRGGIA 148

Query: 143 AQGIPACAACHGAELAGVQPGIPGLLGLPRDYLTAQLGAWRNGERTAKAPDCMGQIARAL 202
            + +PACAACH A  AG+    P L G  + Y  AQL A+R G   A+  D M +I + +
Sbjct: 149 EKSVPACAACHSANGAGLPAQFPRLAGQHQTYTEAQLIAFRTG---ARENDQMSKIVKRM 205

Query: 203 SPEDLHAVSSWLS 215
           S E++ AV+ +++
Sbjct: 206 SDEEIKAVADYVA 218


>gi|134094040|ref|YP_001099115.1| putative cytochrome c
           [Herminiimonas arsenicoxydans]
          Length = 123

 Score = 54.3 bits (129), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 7/112 (6%)

Query: 5   TIKMKKFTTAALGTMLAASLALAQEPAGEARVVPGMSERVAACIACHGQQG-RATADGYY 63
           T  MKK   A L     A++A+A E  G+A+     + +V+ CI CH   G +AT    Y
Sbjct: 15  TAIMKKLF-ALLAFAGVANIAVAAEVVGDAKAA---ANKVSMCIGCHAIPGYKATFPEVY 70

Query: 64  --PRIAGKPEGYLLHQLQSFRDGRRRYPMMNYLLGNLSDAYLQQIAAFFAAQ 113
             P I G+ E Y++  L +++ G R +P M+ +  ++SD  +  +AA+++ Q
Sbjct: 71  QVPMIGGQSEKYIISALHAYKKGERNHPSMHGIAASMSDQDIADVAAYYSQQ 122


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.133    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 457,754
Number of extensions: 18115
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 3
Length of query: 251
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 172
Effective length of database: 740,042
Effective search space: 127287224
Effective search space used: 127287224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)