BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1198.p (230 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094343|ref|YP_001099418.1| response regulator [Herminiimon... 270 3e-74 gi|134093754|ref|YP_001098829.1| two-component regulatory system... 252 1e-68 gi|134096137|ref|YP_001101212.1| response regulator [Herminiimon... 135 2e-33 gi|134093856|ref|YP_001098931.1| two-component system response r... 135 2e-33 gi|134094768|ref|YP_001099843.1| response regulator in two-compo... 131 3e-32 >gi|134094343|ref|YP_001099418.1| response regulator [Herminiimonas arsenicoxydans] Length = 229 Score = 270 bits (691), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 129/227 (56%), Positives = 165/227 (72%) Query: 1 MSKELAHILMVEDEPSIAELLRFTMEGAGFAATIASDVAQARKLIAESLPHMVLLDWMLP 60 M+ E IL+VEDEP I EL+ FT++GAG+ T +A I + LP ++LLDWMLP Sbjct: 1 MAAEKPTILIVEDEPPIIELVTFTLKGAGWNVTAVQTAGEAWDFIQQRLPQLILLDWMLP 60 Query: 61 DSSGLVLLSELRRDQRTAALPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQ 120 D SGL LLS +R D++ LP+IMLTAK MEEDK+ GL+ GADDYVTKPFSP+EL AR+ Sbjct: 61 DQSGLRLLSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARIN 120 Query: 121 ALLRRKAPEIGSQALRYGEISIDVERRQVSVAGKSVLLDQAEFKLLRYLVAHPDRIFSRA 180 ALLRRK PE + G IS+D VS+ + + + AEFKLL++ +AHPDR+FSR+ Sbjct: 121 ALLRRKTPEHAQTLMTAGSISLDPISCSVSMNDEKIDIGHAEFKLLKFFLAHPDRVFSRS 180 Query: 181 QLLDKVWGDHTFIEERTVDVHIMRLRKSLGDLAHYVQTVRGMGYKLS 227 QLLDKVWGDH IEERTVDVH++RLRK+L + H ++TVR +GY LS Sbjct: 181 QLLDKVWGDHVVIEERTVDVHVLRLRKALKEAEHLIKTVRSVGYMLS 227 >gi|134093754|ref|YP_001098829.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 229 Score = 252 bits (643), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 128/227 (56%), Positives = 165/227 (72%) Query: 1 MSKELAHILMVEDEPSIAELLRFTMEGAGFAATIASDVAQARKLIAESLPHMVLLDWMLP 60 MS + A IL+VEDE SI ELLRFT+E A + A VA A LI PH++LLDWMLP Sbjct: 1 MSGDKATILVVEDELSIVELLRFTLEDANWNVVAAGSVAAAWDLIQIRPPHLILLDWMLP 60 Query: 61 DSSGLVLLSELRRDQRTAALPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQ 120 D SGL LLS +R ++ LP+IMLTAK MEEDKV GL GADDYVTKPFSP+EL+ARV Sbjct: 61 DQSGLQLLSRVRESRQFRGLPIIMLTAKSMEEDKVTGLENGADDYVTKPFSPRELIARVT 120 Query: 121 ALLRRKAPEIGSQALRYGEISIDVERRQVSVAGKSVLLDQAEFKLLRYLVAHPDRIFSRA 180 LL+ K PE + ++ G I +D R VSV K++ + AEFKLL+YL+AHP+ ++SR Sbjct: 121 VLLKHKVPEHAQETMKAGPIRLDPASRMVSVGTKNITIGHAEFKLLKYLLAHPNHVYSRD 180 Query: 181 QLLDKVWGDHTFIEERTVDVHIMRLRKSLGDLAHYVQTVRGMGYKLS 227 QL+D+VWG H I+ERTVDV+++RLRK LG+ + ++TVRG+GY L+ Sbjct: 181 QLIDRVWGRHIAIDERTVDVNVLRLRKVLGEGRYLIKTVRGVGYMLT 227 >gi|134096137|ref|YP_001101212.1| response regulator [Herminiimonas arsenicoxydans] Length = 233 Score = 135 bits (340), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 85/231 (36%), Positives = 129/231 (55%), Gaps = 10/231 (4%) Query: 10 MVEDEPSIAELLRFTMEGAGF----AATIASDVAQARKLIAESLPHMVLLDWMLPDSSGL 65 M+ED+ +A ++ + GF +AT A + Q + A +VLLD MLPD+ GL Sbjct: 1 MIEDDQRLAAMVATYLGQNGFDVQHSATAAEGLQQLQHASAGESFAIVLLDLMLPDADGL 60 Query: 66 VLLSELRR-DQRTAALPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLR 124 + ++R LP++MLTAKG D+V GL GADDY+ KPF P+EL+AR++A+LR Sbjct: 61 DVCRQIRAFPAPLNTLPIVMLTAKGDPMDRVVGLELGADDYIPKPFEPRELLARLRAVLR 120 Query: 125 RK--APEIGSQALRYGEISIDVERRQVSVAGKSVLLDQAEFKLLRYLVAHPDRIFSRAQL 182 R+ P LR+G + ID++ R + + + + +F LL + R+ SR QL Sbjct: 121 RQHTTPATDGHVLRFGRLEIDLDARMIRLDDQDKPVTSYQFNLLAAMAERAGRVLSREQL 180 Query: 183 LDKVWGDHTFIEERTVDVHIMRLRKSLGD---LAHYVQTVRGMGYKLSTEQ 230 +D V G+ +R++DVHI RLR ++ D + TVRG GY + Q Sbjct: 181 MDAVKGEPLEAFDRSIDVHIGRLRAAIEDDPKQPKRIITVRGAGYVFAKAQ 231 >gi|134093856|ref|YP_001098931.1| two-component system response regulator [Herminiimonas arsenicoxydans] Length = 231 Score = 135 bits (339), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 82/219 (37%), Positives = 119/219 (54%), Gaps = 3/219 (1%) Query: 8 ILMVEDEPSIAELLRFTMEGAGFAATIASDVAQARKLIAESLPHMVLLDWMLPDSSGLVL 67 IL++EDEP I + L + +GF +A + + +++LD MLP SG L Sbjct: 3 ILVIEDEPKIGDYLVRGLAESGFTVCLARNGRDGLFMATHEAVDLIVLDMMLPLLSGWEL 62 Query: 68 LSELRRDQRTAALPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKA 127 L+ LR +PVI LTA+G ED+VKGL GADDY+ KPF+ EL+AR++ LLRR + Sbjct: 63 LTALRSQADKQHIPVICLTARGEVEDRVKGLELGADDYLIKPFAFVELLARIRTLLRR-S 121 Query: 128 PEIGSQALRYGEISIDVERRQVSVAGKSVLLDQAEFKLLRYLVAHPDRIFSRAQLLDKVW 187 P +R G++ IDV +R+V GK + L EF LL L + SR+ + +VW Sbjct: 122 PVRDEDFIRIGDMEIDVMKRKVMRNGKRITLTAKEFGLLHLLARRQSEVLSRSVIASQVW 181 Query: 188 GDHTFIEERTVDVHIMRLRKSLGDL--AHYVQTVRGMGY 224 + + +D + RLR + D + T RGMGY Sbjct: 182 DINFESDTNVIDAAVRRLRSKIDDPFETKLIHTQRGMGY 220 >gi|134094768|ref|YP_001099843.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Herminiimonas arsenicoxydans] Length = 230 Score = 131 bits (329), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 118/221 (53%), Gaps = 4/221 (1%) Query: 8 ILMVEDEPSIAELLRFTMEGAGFAATIASDVAQARKLIAESLPHMVLLDWMLPDSSGLVL 67 +L+VEDE E L+ + AGFA A++ L +++LD MLPD G + Sbjct: 3 LLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGNYDLIILDVMLPDIDGWKI 62 Query: 68 LSELRRDQRTAALPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKA 127 L LR +P + LTA+ D+VKGL GADDYV KPF+ EL+ARV+ LLRR Sbjct: 63 LQALRNAGNN--VPALFLTARDGVADRVKGLELGADDYVVKPFAFSELLARVRTLLRRGI 120 Query: 128 PEIGSQALRYGEISIDVERRQVSVAGKSVLLDQAEFKLLRYLVAHPDRIFSRAQLLDKVW 187 P ++ ++ +D+ RR + AGK + L EF LL +LV H + R+ + ++W Sbjct: 121 PSPLVDRMQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIASQIW 180 Query: 188 GDHTFIEERTVDVHIMRLRKSLGD--LAHYVQTVRGMGYKL 226 + + +DV I RLR + D + T+RG+GY L Sbjct: 181 DINFNSDTNVIDVAIRRLRSKMDDDYEPKLISTIRGVGYVL 221 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.135 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 410,025 Number of extensions: 15659 Number of successful extensions: 120 Number of sequences better than 1.0e-08: 26 Number of HSP's gapped: 101 Number of HSP's successfully gapped: 26 Length of query: 230 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 151 Effective length of database: 740,042 Effective search space: 111746342 Effective search space used: 111746342 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)