BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1196.p
         (282 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094401|ref|YP_001099476.1| 7,8-dihydropteroate synthase [H...   384   e-108

>gi|134094401|ref|YP_001099476.1| 7,8-dihydropteroate synthase
           [Herminiimonas arsenicoxydans]
          Length = 279

 Score =  384 bits (986), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 177/275 (64%), Positives = 220/275 (80%)

Query: 3   QAFLKCGRFRLPVQIGRRPLVMGILNLTPDSFSDGGRHHSLELALSHAEQMIADGVDIID 62
           Q  L+CGR+ LPV    RPLVMGILN+TPDSFSD G++H+L+ A+SHAE+MIA GVDIID
Sbjct: 2   QTHLQCGRYSLPVAATSRPLVMGILNVTPDSFSDAGKYHALDAAISHAEEMIAAGVDIID 61

Query: 63  IGGESTRPGIAPLSLEQELERVMPVIYALRDCGKPLSLDTYKPAVMREALAAEVDMINDI 122
           IGGESTRPG   +SL+ EL+RVMP++YALRDCGKPLS+DTYKP VMR+ +AA VDM+ND+
Sbjct: 62  IGGESTRPGSQTVSLQDELDRVMPLVYALRDCGKPLSIDTYKPEVMRQTIAAGVDMVNDV 121

Query: 123 NGFRAEGAIEVVKDSEAGLCVMHMQGQPQTMQQAPEYEDVVSEVEQFLQQQVDLMRDAGI 182
           NGFRA GA+E V D++  LC+MHMQ  PQ+MQ  PEYE+VV++V  FL +++  +    I
Sbjct: 122 NGFRAPGALEAVADADCALCIMHMQKDPQSMQLKPEYENVVADVTAFLHERIAAIAQMNI 181

Query: 183 GRERICIDPGFGFGKTVEHNLTLLKNTRRLIDTLGLPLLAGMSRKSMIGAVTGKPLERRL 242
            RER+CIDPGFGFGK++ HN+ LLKN  +L   L LPLLAG+SRKSMIGA+  KP+ERR+
Sbjct: 182 ARERLCIDPGFGFGKSLAHNIALLKNIGQLQAALDLPLLAGLSRKSMIGALLDKPVERRM 241

Query: 243 AGSIGAALAAAQQGAMIIRVHDAAETVDALAMWQA 277
           AGS+  ALA   QGA I+RVHD AETVDAL +W A
Sbjct: 242 AGSLAGALACVAQGARIVRVHDVAETVDALTVWHA 276


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.138    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 488,372
Number of extensions: 18253
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 201
Effective length of database: 733,452
Effective search space: 147423852
Effective search space used: 147423852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)