BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1194.p
         (215 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094399|ref|YP_001099474.1| ribosomal RNA large subunit met...   342   6e-96

>gi|134094399|ref|YP_001099474.1| ribosomal RNA large subunit
           methyltransferase J [Herminiimonas arsenicoxydans]
          Length = 214

 Score =  342 bits (878), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 171/213 (80%), Positives = 190/213 (89%)

Query: 1   MAKNKLNKNWLHDHINDPYVKLAQKEGYRARAAYKLKEIDEEERLIKPGQVIVDLGCTPG 60
           MAK KLNKNWLHDHINDPYVKLAQKEGYRARA YKLKEIDE E+LIKPGQ+IVDLGCTPG
Sbjct: 1   MAKKKLNKNWLHDHINDPYVKLAQKEGYRARAVYKLKEIDESEKLIKPGQIIVDLGCTPG 60

Query: 61  SWCQYVRNKLAGAEGGGIHGTIIGLDILPMDPIADVHYIQGDFREDEPVRQLEAVLDGRK 120
           SW QYVRNKL+G+ GGGI+G IIGLD+L M+PIADVHYIQGDFRE   + QLE VL GRK
Sbjct: 61  SWSQYVRNKLSGSVGGGINGIIIGLDMLEMEPIADVHYIQGDFREQNVLEQLEVVLAGRK 120

Query: 121 ADLVLSDMAPNLSGVAIADAARVEYLIDLAIEFAQQHMKPGGALLVKCFNGTGYNELVHK 180
            DLVLSDMAPNLSG+A+ADAAR+  +I+LAI+FAQ HMKP G+LLVKCFNG+G+N++V K
Sbjct: 121 VDLVLSDMAPNLSGIAVADAARMMDIIELAIDFAQHHMKPSGSLLVKCFNGSGFNDIVEK 180

Query: 181 FRAEFKTVMSKKPKASRDKSSEIFLLGKILKNP 213
           FR EFKTV  KKPKASRDKSSEIFLLGK LKNP
Sbjct: 181 FRHEFKTVTQKKPKASRDKSSEIFLLGKTLKNP 213


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.138    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 426,841
Number of extensions: 17698
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 137
Effective length of database: 743,337
Effective search space: 101837169
Effective search space used: 101837169
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)