BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1191.p (1077 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094395|ref|YP_001099470.1| carbamoyl phosphate synthase, l... 2006 0.0 >gi|134094395|ref|YP_001099470.1| carbamoyl phosphate synthase, large subunit [Herminiimonas arsenicoxydans] Length = 1076 Score = 2006 bits (5197), Expect = 0.0, Method: Compositional matrix adjust. Identities = 969/1077 (89%), Positives = 1027/1077 (95%), Gaps = 1/1077 (0%) Query: 1 MPKRTDIKSILIIGAGPIIIGQACEFDYSGAQACKALREEGFKVILVNSNPATIMTDPEM 60 MPKR DIKSILIIGAGPI+IGQACEFDYSGAQACKALREEG+KVILVNSNPATIMTDPEM Sbjct: 1 MPKRIDIKSILIIGAGPIVIGQACEFDYSGAQACKALREEGYKVILVNSNPATIMTDPEM 60 Query: 61 ADATYIEPITWQAVERIIAKEKPDAILPTMGGQTALNCALDLHRHGVLEKYKVELIGATP 120 AD TYIEPITWQAVERII KE+PDAILPTMGGQTALNCALDLH +GVL KY ELIGA+P Sbjct: 61 ADVTYIEPITWQAVERIIDKERPDAILPTMGGQTALNCALDLHHNGVLTKYGCELIGASP 120 Query: 121 EAIDKAEDRSKFKEAMTKIGLGSARSGVSHTMEESWAVQKTIGFPVIIRPSFTMGGTGGG 180 EAIDKAEDRSKFK+AMTKIGLGSARSGV+HT+EESWAVQK +GFP IIRPSFTMGG+GGG Sbjct: 121 EAIDKAEDRSKFKDAMTKIGLGSARSGVAHTLEESWAVQKELGFPSIIRPSFTMGGSGGG 180 Query: 181 IAYNAEEFETICKRGLEASPTSELLIEESLIGWKEYEMEVVRDKADNCIIVCSIENLDPM 240 IAYNAEEFE ICKRGLEASPTSELLIEESLIGWKE+EMEVVRDKADNCIIVCSIENLDPM Sbjct: 181 IAYNAEEFEAICKRGLEASPTSELLIEESLIGWKEFEMEVVRDKADNCIIVCSIENLDPM 240 Query: 241 GVHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIGVDTGGSNVQFSVNPADGRMIVIEM 300 GVHTGDSITVAPAQTLTDKEYQIMRNAS+AVLREIGVDTGGSNVQF++NP DGRMI+IEM Sbjct: 241 GVHTGDSITVAPAQTLTDKEYQIMRNASIAVLREIGVDTGGSNVQFAINPEDGRMIIIEM 300 Query: 301 NPRVSRSSALASKATGFPIAKIAAKLAVGFTLDELRNEITGGATPASFEPSIDYVVTKIP 360 NPRVSRSSALASKATGFPIAKIAAKLAVGFTLDELRNEITGGATPASFEPSIDYVVTKIP Sbjct: 301 NPRVSRSSALASKATGFPIAKIAAKLAVGFTLDELRNEITGGATPASFEPSIDYVVTKIP 360 Query: 361 RFTFEKFPQADKHLTTQMKSVGEVMAIGRTFQESFQKALRGLEVGVDGMNEKTTDRELIE 420 RF FEKFPQAD HLTTQMKSVGEVMAIGRTFQESFQKALRGLEVGVDGMNEKTTDRE IE Sbjct: 361 RFAFEKFPQADSHLTTQMKSVGEVMAIGRTFQESFQKALRGLEVGVDGMNEKTTDRETIE 420 Query: 421 KELGEPGPDRIWYVGDAFAQGFSLEEVHNLTHIDPWFLSQIKEIVDIELWLEKEVALESL 480 +ELGEPGP+RIWYVGDAFAQGFSLEEVH LTHIDPWFL+QIKEI+DIELWL+ + +L ++ Sbjct: 421 EELGEPGPERIWYVGDAFAQGFSLEEVHGLTHIDPWFLAQIKEIIDIELWLDTQ-SLNAI 479 Query: 481 DKATLFQLKQKGFSDRRLAKLLKTTDSAVREQRKKLGVRPVFKRVDTCAGEFSTNTAYMY 540 DK TLF+LKQKGF+DRRLAKLLKTTD AVREQR + +RPV+KRVDTCAGEF+TNTAYMY Sbjct: 480 DKDTLFKLKQKGFADRRLAKLLKTTDKAVREQRHAMNIRPVYKRVDTCAGEFATNTAYMY 539 Query: 541 STYDEECESNPTDKKKIMVLGGGPNRIGQGIEFDYCCVHAALAMRDDGYETIMVNCNPET 600 STY+EECE+ PT+KKKIMVLGGGPNRIGQGIEFDYCCVHAALA+R+DGYETIMVNCNPET Sbjct: 540 STYEEECEAQPTNKKKIMVLGGGPNRIGQGIEFDYCCVHAALALREDGYETIMVNCNPET 599 Query: 601 VSTDYDTSDRLYFEPVTLEDVLEIVDKEKPVGVIVQYGGQTPLKLALDLEANGVPIVGTS 660 VSTDYDTSDRLYFEP+TLEDVLEIV EKP GVIVQYGGQTPLKLALDLEANGVPIVGTS Sbjct: 600 VSTDYDTSDRLYFEPLTLEDVLEIVALEKPYGVIVQYGGQTPLKLALDLEANGVPIVGTS 659 Query: 661 PDMIDAAEDRERFQKLLQDLGLRQPPNRTARTEADALQLAQEIGYPLVVRPSYVLGGRAM 720 PDMIDAAEDRERFQKLL DLGLRQPPNRTARTE DAL+LAQEIGYPLVVRPSYVLGGRAM Sbjct: 660 PDMIDAAEDRERFQKLLNDLGLRQPPNRTARTEEDALRLAQEIGYPLVVRPSYVLGGRAM 719 Query: 721 EIVHEQRDLERYMREAVKVSHDSPVLLDRFLNDAIEVDVDCLSDGERTFIGGVMEHIEQA 780 EIVHEQRDLERYMREAVKVSHDSPVLLDRFLNDAIEVDVDCLSDGERTFIGGVMEHIEQA Sbjct: 720 EIVHEQRDLERYMREAVKVSHDSPVLLDRFLNDAIEVDVDCLSDGERTFIGGVMEHIEQA 779 Query: 781 GVHSGDSACSLPPYSLSKDTIEELKRQTALMAKGLNVVGLMNVQFAIQQSEVDGKTVDTV 840 GVHSGDSACSLPPYSLS++TI ELKRQT+LMAKGLNV+GLMNVQFAIQQ E+DGK D V Sbjct: 780 GVHSGDSACSLPPYSLSQETINELKRQTSLMAKGLNVIGLMNVQFAIQQQEIDGKLQDVV 839 Query: 841 FVLEVNPRASRTVPFVSKATGLQLAKIAARCMVGQSLDSQGIKNEVVPPYYSVKEAVFPF 900 FVLEVNPRASRTVP+VSKATGLQLAKIAARCMVGQSLDSQGI NEV+P Y+SVKEAVFPF Sbjct: 840 FVLEVNPRASRTVPYVSKATGLQLAKIAARCMVGQSLDSQGIFNEVIPEYFSVKEAVFPF 899 Query: 901 VKFPGVDTILGPEMKSTGEVMGVGKTFGEAFVKSQMGAGVKLPKSGKVFLSVKNSDKPRT 960 VKFPGVDTILGPEMKSTGEVMGVGKTFGEAFVKSQ+GA +KLP+SGKVFLSVK SDKPR Sbjct: 900 VKFPGVDTILGPEMKSTGEVMGVGKTFGEAFVKSQLGASIKLPRSGKVFLSVKASDKPRA 959 Query: 961 VQVARDLVALGFSIVATKGTAAAISAAGIPVATVNKVVEGRPHIVDMVKNNEIALVVNTV 1020 VQVA+DLV +GFS+VATKGTAAAISAAGI V +VNKV EGRPHIVDM+KN+EIALV+NTV Sbjct: 960 VQVAKDLVEIGFSVVATKGTAAAISAAGIEVTSVNKVAEGRPHIVDMIKNDEIALVINTV 1019 Query: 1021 EEKRNAIADSGAIRTSALAARVTTFTTIAGAEAAVEGMRHLEALDVYDLQGLHKAIH 1077 EEKR+AI DS IRTSALAARVTTFTTIAGAEAAVEGM HL+ L VYDLQGLHK +H Sbjct: 1020 EEKRSAIIDSRTIRTSALAARVTTFTTIAGAEAAVEGMAHLDELHVYDLQGLHKTLH 1076 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.317 0.134 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,964,211 Number of extensions: 81754 Number of successful extensions: 235 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 225 Number of HSP's successfully gapped: 1 Length of query: 1077 Length of database: 1,000,347 Length adjustment: 92 Effective length of query: 985 Effective length of database: 697,207 Effective search space: 686748895 Effective search space used: 686748895 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 134 (56.2 bits)