BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1190.p
         (387 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094394|ref|YP_001099469.1| carbamoyl phosphate synthetase,...   602   e-174
gi|134093487|ref|YP_001098562.1| aminodeoxychorismate synthase s...    59   4e-10

>gi|134094394|ref|YP_001099469.1| carbamoyl phosphate synthetase,
           glutamine amidotransferase small subunit [Herminiimonas
           arsenicoxydans]
          Length = 342

 Score =  602 bits (1553), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 295/345 (85%), Positives = 319/345 (92%), Gaps = 3/345 (0%)

Query: 43  MTGYQEILTDPSYSRQIVTLTYPHIGNTGVNREDVEASQIHAAGLIIKDLPRLLSNFRSQ 102
           MTGYQEILTDPSYS Q+VTLTYPHIGNTGVN EDVE+ +IHAAGLIIKDLP L+SNFRS 
Sbjct: 1   MTGYQEILTDPSYSNQLVTLTYPHIGNTGVNAEDVESFKIHAAGLIIKDLPILVSNFRST 60

Query: 103 QSLSDYLKEGNIVSIAGIDTRKLTRILREKGAQNGAIVAGEADIAAATAKALELARAFPG 162
           Q+LSDYLK  NI+ IAGIDTRKLTRILREKGAQ+GAI+AGE    A   KAL LA+ F G
Sbjct: 61  QTLSDYLKSENIIGIAGIDTRKLTRILREKGAQSGAILAGED---ATAEKALALAKTFGG 117

Query: 163 LAGMDLAKVVSTKKAYNWTETEWRLGRGYGQQITPKFHVVAFDYGVKYNILRMLAERGCK 222
           LAG+DLAKVVSTK +Y W ETEW+LG+GYG+QITPK+HVVA+DYGVK+NILRMLAERGCK
Sbjct: 118 LAGLDLAKVVSTKASYPWNETEWKLGKGYGKQITPKYHVVAYDYGVKFNILRMLAERGCK 177

Query: 223 VTVLPAQATAAEALALNPDGIFLSNGPGDPEPCDYAIAASKELIERGIPTFGICLGHQIM 282
           VTVLPAQATAAEALAL PDGIFLSNGPGDP+PCDYAIAA+KELIERGIPTFGICLGHQIM
Sbjct: 178 VTVLPAQATAAEALALKPDGIFLSNGPGDPQPCDYAIAATKELIERGIPTFGICLGHQIM 237

Query: 283 ALASGAKTLKMKFGHHGANHPVQDLDSKQVMITSQNHGFAVDQATLPANCRVTHVSLFDG 342
           ALASGAKT KM FGHHGANHPVQDLDSK+V+ITSQNHGFAVD ATLPANCRVTHVSLFDG
Sbjct: 238 ALASGAKTFKMGFGHHGANHPVQDLDSKKVLITSQNHGFAVDAATLPANCRVTHVSLFDG 297

Query: 343 SLQGFERTDKPAFCFQGHPEASPGPHDIAPLFDKFVAMMEKKQNA 387
           SLQGFERTD+PAFCFQGHPEASPGPHDIAPLFD+FVAMMEK +NA
Sbjct: 298 SLQGFERTDQPAFCFQGHPEASPGPHDIAPLFDRFVAMMEKNKNA 342


>gi|134093487|ref|YP_001098562.1| aminodeoxychorismate synthase
           subunit II [Herminiimonas arsenicoxydans]
          Length = 184

 Score = 58.9 bits (141), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 13/173 (7%)

Query: 210 YNILRMLAERGCKV-TVLPAQATAAEALALNPDGIFLSNGPGDPEPCDYAIAASKELIER 268
           YN+++   E G +V TV   + T  E  AL  D I +S GP  P     +I        +
Sbjct: 10  YNLVQYFGELGEEVVTVRNDEITLEEIEALKADRICVSPGPCTPHEAGISIPVLTHFAGK 69

Query: 269 GIPTFGICLGHQIMALASGAKTLKMKFGHHGANHPV--------QDLDSKQVMITSQNHG 320
            +P  G+CLGHQ +  A G K ++ +   HG    +        +DL S   +  ++ H 
Sbjct: 70  -LPILGVCLGHQAIGAAFGGKVVRAQQVMHGKTSLITHTGFGVFKDLPSPYTI--TRYHS 126

Query: 321 FAVDQATLPANCRVTHVSLFDGSLQGFERTDKPAFCFQGHPEASPGPHDIAPL 373
            A+++++LP+   VT  +  DG + G    D      Q HPE+    H  A L
Sbjct: 127 LAIERSSLPSCLEVTAWT-DDGEIMGVRHKDFDIQGVQFHPESILSEHGHALL 178


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 704,805
Number of extensions: 26654
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 2
Length of query: 387
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 304
Effective length of database: 726,862
Effective search space: 220966048
Effective search space used: 220966048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)