BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1188.p
         (203 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094390|ref|YP_001099465.1| hypothetical protein HEAR1160 [...   234   2e-63
gi|134093999|ref|YP_001099074.1| putative lipoprotein [Herminiim...   137   3e-34

>gi|134094390|ref|YP_001099465.1| hypothetical protein HEAR1160
           [Herminiimonas arsenicoxydans]
          Length = 178

 Score =  234 bits (598), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 116/201 (57%), Positives = 145/201 (72%), Gaps = 23/201 (11%)

Query: 1   MTLRRSDRIRRQTARVCALAAGLWISASAYSADLSLAAQDLPPPQATSPQAQQLISKTNL 60
           MT  +   +  + AR    A  L  +++A+S+DL                   L+ +T+ 
Sbjct: 1   MTFSQRPLLTFKLARSAIFALSLMATSAAWSSDL-------------------LMQETDK 41

Query: 61  AIARLQDITNRASELATQALAMLGINYRYGGNSPDTGLDCSGLVRYVFKEAWGTDLPRTA 120
            I++LQD+T+RASELA QA+ MLGI Y+YGG++P+ GLDCSGLV+++FKEAWG DLPRT+
Sbjct: 42  PISKLQDLTHRASELALQAMGMLGIRYKYGGSTPENGLDCSGLVQHIFKEAWGKDLPRTS 101

Query: 121 LEISRVGEKIGRDNLQPGDLVFYNTLRRGFSHVGIYLGDGKFIHSPSAGGQVRIESMDES 180
           +EISRVGE I + +LQPGDLVFYNTL+RGFSHVGIYLGD KFIHSPS GGQVRIESMD +
Sbjct: 102 VEISRVGEHIEKKDLQPGDLVFYNTLKRGFSHVGIYLGDRKFIHSPSPGGQVRIESMDVA 161

Query: 181 YWKKRFNGARRIIAGDDDDDQ 201
           YWKKRFNG RRI     D DQ
Sbjct: 162 YWKKRFNGGRRI----SDQDQ 178


>gi|134093999|ref|YP_001099074.1| putative lipoprotein
           [Herminiimonas arsenicoxydans]
          Length = 176

 Score =  137 bits (346), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 60/125 (48%), Positives = 90/125 (72%)

Query: 66  QDITNRASELATQALAMLGINYRYGGNSPDTGLDCSGLVRYVFKEAWGTDLPRTALEISR 125
           Q ++ + +E+A  A+ M+   Y++GG +P+ GLDCSG+V Y++ +A    +  +A +I+R
Sbjct: 48  QPVSEKGNEVALYAMGMIDTGYQFGGKNPEAGLDCSGMVSYIYGKAVDLKVTGSAADIAR 107

Query: 126 VGEKIGRDNLQPGDLVFYNTLRRGFSHVGIYLGDGKFIHSPSAGGQVRIESMDESYWKKR 185
            G++I    L+PGDLVF+NTL R FSHVG+Y+GDG+FIH+PS+ G+VRIE MD  Y+  R
Sbjct: 108 RGKEIDPRTLRPGDLVFFNTLNRSFSHVGVYIGDGRFIHAPSSKGKVRIERMDNLYFAPR 167

Query: 186 FNGAR 190
           F  AR
Sbjct: 168 FEMAR 172


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 300,884
Number of extensions: 11036
Number of successful extensions: 30
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 2
Length of query: 203
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 126
Effective length of database: 746,632
Effective search space: 94075632
Effective search space used: 94075632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)