BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1185.p
         (196 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096463|ref|YP_001101538.1| hypothetical protein HEAR3311 [...   134   3e-33

>gi|134096463|ref|YP_001101538.1| hypothetical protein HEAR3311
           [Herminiimonas arsenicoxydans]
          Length = 196

 Score =  134 bits (338), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 77/168 (45%), Positives = 105/168 (62%)

Query: 4   FTLAQRAEIELEIRKSRFIGIVMPVPGREAAMQEIARMRDAHRNATHVCWALMAGGQSGM 63
           + LA  A  E+EI+KSRFIG++ P+  R  A   +A +R  H NA H CW LM  G SG+
Sbjct: 2   YQLAASATAEIEIKKSRFIGLLYPLTTRAEARAILAGLRAQHPNAVHFCWVLMCDGDSGL 61

Query: 64  SDDGEPSGTAGRPMLEVLRHHELDGVLAMVVRYYGGVKLGAGGLVRAYTDAIATALKSTQ 123
            DDGEPSGTA RPM  VL H ++  VLA+VVRY+GG+KLGAGGL RAY  AI+ A+K+ +
Sbjct: 62  DDDGEPSGTAARPMYNVLVHKDVFNVLAVVVRYWGGMKLGAGGLTRAYGQAISEAIKNAE 121

Query: 124 RTERVAQAEIEIGVVYAAEPQLRHWLAQQKYELLDSRHDTLAHLHLRL 171
                A  E    + +A E  LR +  QQ   ++D+++     L L++
Sbjct: 122 LLPVEAMCERRFVLQFADESSLRRYCEQQDVSVIDAQYGDAVTLLLKM 169


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 338,691
Number of extensions: 13619
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 119
Effective length of database: 746,632
Effective search space: 88849208
Effective search space used: 88849208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)