BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1182.p
         (318 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095322|ref|YP_001100397.1| methionine biosynthesis [Hermin...    79   3e-16
gi|134093581|ref|YP_001098656.1| LysR family transcriptional reg...    65   4e-12
gi|134093979|ref|YP_001099054.1| LysR family transcriptional reg...    60   2e-10

>gi|134095322|ref|YP_001100397.1| methionine biosynthesis
           [Herminiimonas arsenicoxydans]
          Length = 306

 Score = 79.0 bits (193), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 125/266 (46%), Gaps = 15/266 (5%)

Query: 15  SRLRMKQLQLLIALDDHQSLHKASSALAMTQSAASKSLAELESMLDAQLFERTKSGLIPN 74
           S L ++ L+ LIAL +  +L +A+S L +TQSA S  L +LE     QLFER     +P 
Sbjct: 3   SILELRHLKTLIALREAGNLLRAASLLNVTQSALSHQLKQLEDHHGTQLFERKS---VPV 59

Query: 75  QFGHCVIRYARLMATDLGSLCE---EMAQLRSGRGGRLAIGAVMGALPELVVPAVEALQR 131
           +F     R  +L  T L  + E   ++ +L  G  G+L I        + ++PA++  + 
Sbjct: 60  RFTPAGERLLKLADTVLPQVAETERDLVRLAQGVAGQLRIAVECHTCFDWLMPAMDVFRG 119

Query: 132 RHPELSIDIVEDTSVQLLGLLDEGHLDLLVARASVSDHPGKYHYQPLSEEPLSVVVSGEH 191
           R PE+ +DIV       +GLL E   D+ +      D    YH   L    +  +V+ +H
Sbjct: 120 RWPEVELDIVSGFQADPVGLLYEHRADVAIVAEIDPDETVDYH--ALFRFEIVALVAHDH 177

Query: 192 PRPRAKHMGLAALAGYRWVTYPSHMPLHAVLEREMDLAGVPMPGNAISTASTFVTVALLQ 251
           P    + +      G   +TYP    +  V+ + +  AG+      +   +T +TVA+LQ
Sbjct: 178 PLADKEFLVAEDFIGDTLITYPVPDDMLDVVRQVLKPAGI-----KVERRTTELTVAMLQ 232

Query: 252 --QSSDLVSILPTAVAELFVKRGMLR 275
              S   ++ LP   A+ ++ R  ++
Sbjct: 233 LVASRRGIATLPVWAAQNYLNRDYVK 258


>gi|134093581|ref|YP_001098656.1| LysR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 315

 Score = 65.1 bits (157), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 124/283 (43%), Gaps = 7/283 (2%)

Query: 17  LRMKQLQLLIALDDHQSLHKASSALAMTQSAASKSLAELESMLDAQLFERTKSGLIPNQF 76
           + + +L+ ++A+   +    A+ A  + Q   S ++ +LE  L   LFER  S +     
Sbjct: 1   MTLTELKYIVAVAREKHFGHAAEACHVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPL 60

Query: 77  GHCVIRYARLMATDLGSLCEEMAQLRSGRGGRLAIGAVMGALPELVVPAVEALQRRHPEL 136
           G  ++  A  +     ++ E   Q +    G   +G +    P L+ P V+A+  R P++
Sbjct: 61  GVQIVAQAERVLEQTAAIKEIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKAMIERVPQM 120

Query: 137 SIDIVEDTSVQLLGLLDEGHLDLLVARASVSDHPGKYHYQPLSEEPLSVVVSGEHPRPRA 196
            + + E+ +V+LL  L +G +D  +    + D       QP+ +EP  V V   HP    
Sbjct: 121 PLVLQENFTVKLLEQLRQGEIDAAIVALPIPDQ--GLLVQPVYDEPFVVAVPKHHPWAER 178

Query: 197 KHMGLAALAGYRWVTYPS-HMPLHAVLEREMDLAGVPMPGNAIS---TASTFVTVALLQQ 252
             +    L     +   + H     VLE   +++     G+ I+     S+  T+  +  
Sbjct: 179 SSVTTDNLKSETMLLLGNGHCFRDQVLEVCPEMSRFSTSGDGIARTFEGSSLETIRHMVA 238

Query: 253 SSDLVSILPTA-VAELFVKRGMLRILPVKLRSMSQTIGIVTRK 294
           S   +++LP A V ++    GMLR +P      S+ + +V RK
Sbjct: 239 SGIGITVLPQASVPDMHTTDGMLRYIPFVQPGPSRRVVLVWRK 281


>gi|134093979|ref|YP_001099054.1| LysR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 297

 Score = 59.7 bits (143), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 92/195 (47%), Gaps = 11/195 (5%)

Query: 17  LRMKQLQLLIALDDHQSLHKASSALAMTQSAASKSLAELESMLDAQLFERTKSGLIPNQF 76
           + ++QL+  + + +     +A+  L MTQ   S+++  LE+ML  QLF RT   +     
Sbjct: 3   IELRQLRYFVTVAEEMHFGRAAIRLHMTQPPLSQAIQSLEAMLGVQLFRRTSRSVALTPA 62

Query: 77  GHCVIRYARLMATDLGSLCEEMAQLRSGRGGRLAIGAVMGALPELVVPAVEALQRRHPEL 136
           G  ++  A+ +     +L + M ++ SG  GRL++  V  A   ++ P +   +  +P +
Sbjct: 63  GSALLPEAQRILQQTAALPDLMRRVTSGASGRLSLAFVSTADYSVLPPFLREFRESYPGV 122

Query: 137 SIDIVEDTSVQLLGLLDEGHLDLLVARASVSDHPG-KYHYQPLSEEPLSVVVSGEHPRPR 195
            ID+ E T+   L  L +G +D+ +    + D    +  Y P+  EPL +          
Sbjct: 123 EIDLREATTDVQLDDLMQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLIL---------- 172

Query: 196 AKHMGLAALAGYRWV 210
           A   GL AL G + V
Sbjct: 173 AAPKGLKALKGKQSV 187


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.132    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 509,190
Number of extensions: 18868
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 6
Length of query: 318
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 236
Effective length of database: 730,157
Effective search space: 172317052
Effective search space used: 172317052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)