BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1181.p
         (306 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095359|ref|YP_001100434.1| dihydrodipicolinate synthase [H...    74   6e-15

>gi|134095359|ref|YP_001100434.1| dihydrodipicolinate synthase
           [Herminiimonas arsenicoxydans]
          Length = 292

 Score = 74.3 bits (181), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 137/279 (49%), Gaps = 12/279 (4%)

Query: 21  GQLDLEGQKRAIDFMIDAGSNGICILANFSEQFVLSDEERVQVQNTVLEHVAGRVPVIVT 80
           G LDL G ++ ID+ I  G++GI I+    E   +S +E  ++    +EH A R+P+I  
Sbjct: 17  GALDLPGLRKLIDWHIAEGTDGIVIVGTTGESPTVSVDEHCELIRVAVEHTAKRIPIIAG 76

Query: 81  TTHFGSQICAERSRAAQDAGAAMVMVMPPYHGATFRVSEKQIYEFYGRVSDAIDIPIMIQ 140
           T    +    E ++ A+D GA   + + PY+    R +++ +Y+ + ++ +A+D+P ++ 
Sbjct: 77  TGGNSTSEAIELTQFAKDVGADASLQVVPYYN---RPTQEGMYQHFKKIVEAVDLPAILY 133

Query: 141 DAP-VAGTPLSAPFLARMAKEIENVSYFKIETAGAASKLRELIELGGEAVVGPWDGEEAI 199
           + P      +S   + R+A +I +V   K +  G  S+  +L+ L  +     + G++A 
Sbjct: 134 NVPGRTVADMSNETILRLA-QIPSVIGVK-DATGNISRGIDLMRLRPKD-FAVYSGDDA- 189

Query: 200 TLIPDLDGGATG--AMTGGGYPDGIRKIVDAYFAGDTEKAAELYMQWLPLINYENRQCGL 257
           T +  +  GA G  ++T    P G+ ++ DA       +A  +  + +PL N    +   
Sbjct: 190 TAMALMLCGANGNISVTANIAPRGMHQLCDAAINQRVAEAIAINNKLVPLHNKLFIEPNP 249

Query: 258 SACKALMLAGGVIKSDMLRHPQAPLHPKVREGLLRVARR 296
              K  M   G+I S M R P  PL  +  + ++R A R
Sbjct: 250 VPLKWAMAEIGLIPSGM-RLPIVPLAAEYHD-IVRAAMR 286


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.138    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 565,823
Number of extensions: 21471
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 225
Effective length of database: 733,452
Effective search space: 165026700
Effective search space used: 165026700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)