BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1180.p
         (224 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095106|ref|YP_001100181.1| osmolarity response regulator [...    66   1e-12
gi|134093672|ref|YP_001098747.1| putative response regulator in ...    65   4e-12
gi|134095798|ref|YP_001100873.1| OmpR family response regulator ...    62   2e-11

>gi|134095106|ref|YP_001100181.1| osmolarity response regulator
           [Herminiimonas arsenicoxydans]
          Length = 255

 Score = 66.2 bits (160), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 20/187 (10%)

Query: 48  DIAIVNVGRASGAGYALTQQLRNANARMGILLLASPQESVTTRISGLDHGADFCEALPEK 107
           D+ ++++      G ++ ++LR A  +  I++L +  E V  RI GL+ GAD   A P  
Sbjct: 65  DLLVLDLMLPGEDGLSICRRLRGAGDKTPIIMLTAKGEDVD-RIVGLEMGADDYIAKPFN 123

Query: 108 LELINAYIEVMLRRVAPE----------------AWRLDTAARTLRAPQHDAVEINSREV 151
              + A I  +LRR+ P+                 + LD   RTL+    + V + + E 
Sbjct: 124 PRELVARISAVLRRIGPDEAPGAPSETPQSFTFGEFTLDLGTRTLKK-NDETVPLTTGEF 182

Query: 152 ALLKVLANSSRHAADRCAIAH-AFGVEWVSFDERVLEKTVSRLRRKWRDSTMYDLPLRTV 210
           ++LKV A  +R    R  +   A G E+  FD R L+  +SRLR+         L ++TV
Sbjct: 183 SVLKVFARHARQPLSREKLMELARGREYEVFD-RSLDVQISRLRKLIEPDPSTPLYIQTV 241

Query: 211 HGVGYCF 217
            G+GY F
Sbjct: 242 WGLGYVF 248


>gi|134093672|ref|YP_001098747.1| putative response regulator in
           two-component regulatory system [Herminiimonas
           arsenicoxydans]
          Length = 236

 Score = 64.7 bits (156), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 105/226 (46%), Gaps = 11/226 (4%)

Query: 4   ILLIEDILRSYRNSTVCSFLEKQGHKVSRIMADEEELMMPT-QLGDIAIVNVGRASGAGY 62
           +L++ED  R          L   G++V  I + E    +P   + DIAI+++      G 
Sbjct: 13  LLVVED--RISLLEVTVETLTAHGYEVIGIDSAEAMDELPAGYVADIAILDLNLPGEDGL 70

Query: 63  ALTQQLRNANARMGILLLASPQESVTTRISGLDHGADFCEALPEKLELINAYIEVMLRRV 122
           +L Q+LR     +GI+++ + + ++  +++G +HGAD     P   E + A +E + RR+
Sbjct: 71  SLAQRLRRIQPGIGIIMVTA-RHALEQKLAGYEHGADLYLTKPTAPEELCATVEALARRI 129

Query: 123 AP------EAWRLDTAARTLRAPQHDAVEINSREVALLKVLANSSRHAADRCAIAHAFGV 176
           +        A+ L+TA   L  PQ D + + + E ALL   A +  H  +          
Sbjct: 130 SSRATTEVPAFTLNTATGVLTTPQGD-LALRASEAALLHAFALAPEHTLEFWKALEKLNK 188

Query: 177 EWVSFDERVLEKTVSRLRRKWRDSTMYDLPLRTVHGVGYCFTEAIQ 222
                 +  LE  VSRLR K       D P+R + G+GY  + ++Q
Sbjct: 189 PIDGQGKAQLEVVVSRLRSKLVSHGASDTPIRALRGIGYRLSMSLQ 234


>gi|134095798|ref|YP_001100873.1| OmpR family response regulator
           [Herminiimonas arsenicoxydans]
          Length = 233

 Score = 62.4 bits (150), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 108/237 (45%), Gaps = 32/237 (13%)

Query: 4   ILLIED-------ILRSYRNSTVCSFLEKQGHKVSRIMADEEELMMPTQLGDIAIVNVGR 56
           ILL ED       + RS R S   +   K G         E +  + TQ  D+ I+++G 
Sbjct: 3   ILLAEDDSVLADGLTRSLRQSGYVTDCVKNGV--------EADSALSTQDFDLLILDLGL 54

Query: 57  ASGAGYALTQQLRNANARMGILLLASPQESVTTRISGLDHGADFCEALPEKLELINAYIE 116
              +G  + Q+LR  N+R+ +L+L +  +S+  R+ GLD GAD   A P  L  + A + 
Sbjct: 55  PKMSGLEVLQRLRARNSRLPVLILTA-GDSIEQRVKGLDLGADDFMAKPFALSELEARVR 113

Query: 117 VMLRRVA---PEAWR-----LDTAARTLRAPQHDAVEINSREVALLKVLAN-SSRHAADR 167
            + RR A   P   +      D   R +       +E+++RE+ LL+VL   S R  +  
Sbjct: 114 ALTRRGAGGGPTVIKHGPLSYDQVGR-IAYINDQMLELSARELGLLEVLLQRSGRLVSKE 172

Query: 168 CAIAHAFGVEWV-SFDERVLEKTVSRLRRKWRDSTMYDLPLRTVHGVGYCFTEAIQA 223
             + H    EW        +E  V RLR+K     +  L + TV G+GYC  +  +A
Sbjct: 173 QLVDHL--CEWSEEVSNNAIEVYVHRLRKKIE---IGGLRIATVRGLGYCLEKFAEA 224


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 400,713
Number of extensions: 14837
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 3
Length of query: 224
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 146
Effective length of database: 743,337
Effective search space: 108527202
Effective search space used: 108527202
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)