BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1176.p (309 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herm... 80 2e-16 gi|134095507|ref|YP_001100582.1| putative transcriptional regula... 77 1e-15 gi|134093609|ref|YP_001098684.1| putative transcriptional regula... 74 1e-14 gi|134094015|ref|YP_001099090.1| LysR family transcriptional reg... 68 6e-13 gi|134095236|ref|YP_001100311.1| transcriptional regulator [Herm... 67 8e-13 >gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 293 Score = 79.7 bits (195), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 94/184 (51%) Query: 10 RSFLHVMREGSLSGAARVLDLAQPTLGRQIQALEASLKTRLFTRSQTGLQPTDAAQALLP 69 ++F+ V+ G+L AA+ L + R + LE L T L TR+ ++ TD + L Sbjct: 9 KTFVAVIDSGTLGAAAQHLGQTTSAVSRGLSRLEEKLATSLLTRTTRRMELTDEGRLFLK 68 Query: 70 HAQAMESIAAAAQRTAADHSKEISGTVRLTASEVMGMEVLPPILKSLRQRYPELRVELVL 129 A+A+ + A+ ++ SG +R+ A+ + + P + R YP++ +EL Sbjct: 69 KARAILAAMDEAEEAIRVRRQQPSGRLRIDAAAPFILHAIVPHVAEFRALYPQITLELTS 128 Query: 130 SNDVQDLLHRQADIAVRMVSPHQERLIARRIGTVDCGLHAARDYLKRYGLPRCMDDLRRH 189 ++ V DLL + DIA+R+ + L AR + L A+ DYL+R+G+P + L H Sbjct: 129 NDQVADLLEHRTDIAIRIGNLQDSTLHARALTANPLHLLASPDYLQRHGMPTTPEQLAGH 188 Query: 190 TVIG 193 ++G Sbjct: 189 QLLG 192 >gi|134095507|ref|YP_001100582.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 287 Score = 77.0 bits (188), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 96/183 (52%) Query: 10 RSFLHVMREGSLSGAARVLDLAQPTLGRQIQALEASLKTRLFTRSQTGLQPTDAAQALLP 69 ++F+ V+ S + A LD+++ + + + LE L TRL R+ L T++ A Sbjct: 2 KTFVAVVEAESFTAAGARLDISKALVSKYVGILEDHLGTRLLNRTTRRLSLTESGLAYYE 61 Query: 70 HAQAMESIAAAAQRTAADHSKEISGTVRLTASEVMGMEVLPPILKSLRQRYPELRVELVL 129 + + A++ AA + GT+++ G + P+L +RYPE+R+++ L Sbjct: 62 RCLQILADVDEAEQVAAQSAAMPRGTLKVAMPVSFGTVRIAPLLTEYMRRYPEVRLDIAL 121 Query: 130 SNDVQDLLHRQADIAVRMVSPHQERLIARRIGTVDCGLHAARDYLKRYGLPRCMDDLRRH 189 ++ DL+ D+A+R+ + + LIAR++ T L A+ YL+ +G P+ +DL++H Sbjct: 122 ADRRVDLIEDGYDLAIRVGNLPESGLIARKLATDRIVLCASPAYLQVHGAPQTPEDLKQH 181 Query: 190 TVI 192 + Sbjct: 182 ACL 184 >gi|134093609|ref|YP_001098684.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 301 Score = 73.6 bits (179), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 90/185 (48%), Gaps = 6/185 (3%) Query: 11 SFLHVMREGSLSGAARVLDLAQPTLGRQIQALEASLKTRLFTRSQTGLQPTDAAQALLPH 70 +F+ + S + AA L + +GR+I ALE L RL RS L T+ L H Sbjct: 9 AFVMAVEHSSFAAAALALQVTPVMVGRRIDALEKRLGVRLLHRSTRRLALTEEGSVYLEH 68 Query: 71 AQAMESIAAAAQRTAADHSKEISGTVRLTASEVMGMEVLPPILKSLRQRYPELRVELVLS 130 + M S A+ T + ++SG + ++A G + + P ++ +++P L++ L+ Sbjct: 69 CRKMLSELDQAESTLSAGHNKVSGHLIISAPASFGRQHVAPYAQNFLEQHPGLKMSFNLT 128 Query: 131 NDVQDLLHRQADIAVRMVSPHQERLIARRIGT---VDCGLHAARDYLKRYGLPRCMDDLR 187 + V DL+ D+ +R+ +A ++ V CG DY K++G P+ +DDL Sbjct: 129 DRVVDLVQEGYDMGIRIGGTIDPNFVAIKLAANKRVVCG---TPDYFKKHGKPKTLDDLA 185 Query: 188 RHTVI 192 +H + Sbjct: 186 KHNCL 190 >gi|134094015|ref|YP_001099090.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 305 Score = 67.8 bits (164), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 91/181 (50%) Query: 12 FLHVMREGSLSGAARVLDLAQPTLGRQIQALEASLKTRLFTRSQTGLQPTDAAQALLPHA 71 F +++ GSL+ AA+ L + P++ +++ +EA L+ RL R+ + T + L Sbjct: 10 FALLVKRGSLAAAAQELGVTPPSVSKRLAGIEARLRVRLLNRTTRRISLTPEGEIYLADG 69 Query: 72 QAMESIAAAAQRTAADHSKEISGTVRLTASEVMGMEVLPPILKSLRQRYPELRVELVLSN 131 + + A ++ + + G ++++A+ G + P L + + YPE+ V+L L++ Sbjct: 70 ARLVAELEALEQRISGGNVTAKGLLKISATFGFGRRHITPQLSAFARLYPEVDVQLHLTD 129 Query: 132 DVQDLLHRQADIAVRMVSPHQERLIARRIGTVDCGLHAARDYLKRYGLPRCMDDLRRHTV 191 +L+ + D +R RL AR+I + A+ YLK +G+P DL++H Sbjct: 130 RPVNLVEQGFDADIRFGQLPDARLTARKIADNRRLVCASPAYLKNHGIPLTPRDLQKHNC 189 Query: 192 I 192 I Sbjct: 190 I 190 >gi|134095236|ref|YP_001100311.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 301 Score = 67.4 bits (163), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 1/185 (0%) Query: 3 NTDWTLYRSFLHVMREGSLSGAARVLDLAQPTLGRQIQALEASLKTRLFTRSQTGLQPTD 62 N + L R F S AA L + + R IQ LE LF RS ++ T Sbjct: 2 NKEMELLRIFRVAAESSSFRDAAVRLGTSPQGVTRAIQQLEQHYGEVLFHRSTRQVRITA 61 Query: 63 AAQALLPHAQ-AMESIAAAAQRTAADHSKEISGTVRLTASEVMGMEVLPPILKSLRQRYP 121 + LL + A+E + +D +SGTVR+TA +G + P L+ + R+P Sbjct: 62 FGEGLLDQVRPALERFEDLWRTPGSDQQASLSGTVRITAPHSLGTRAVLPALERVAARHP 121 Query: 122 ELRVELVLSNDVQDLLHRQADIAVRMVSPHQERLIARRIGTVDCGLHAARDYLKRYGLPR 181 ++ +++ LS+ + + + D+ +R+ R +AR+ + + AA +K+ G+P Sbjct: 122 DITLDVRLSDRISNTVDEGIDVGIRVGFMRDSRFVARKAADMKLPIVAAPRLIKKVGVPE 181 Query: 182 CMDDL 186 +D L Sbjct: 182 NIDAL 186 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 549,146 Number of extensions: 21259 Number of successful extensions: 92 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 95 Number of HSP's successfully gapped: 8 Length of query: 309 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 228 Effective length of database: 733,452 Effective search space: 167227056 Effective search space used: 167227056 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)