BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1175.p (594 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [... 213 3e-56 gi|134096143|ref|YP_001101218.1| hypothetical protein HEAR2987 [... 210 2e-55 gi|134094323|ref|YP_001099398.1| putative sensory protein [Hermi... 207 1e-54 gi|134094611|ref|YP_001099686.1| hypothetical protein HEAR1387 [... 197 9e-52 gi|134094472|ref|YP_001099547.1| hypothetical protein HEAR1245 [... 191 1e-49 >gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [Herminiimonas arsenicoxydans] Length = 859 Score = 213 bits (541), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 151/441 (34%), Positives = 240/441 (54%), Gaps = 23/441 (5%) Query: 160 ARLDSLRVSSYVDSLTSLPNRSRLLVDLQSLQALAGSSEVFSDKLTAVAVDICDQVYLGD 219 AR++SL ++ D LT LPNR+ L+D ++ +AL + E D+ T +AV D + + Sbjct: 426 ARIESL---AHFDVLTGLPNRA--LLDERAQRALRLAEE---DQAT-LAVMFLDLDHFKN 476 Query: 220 MIKALGWDYVEGFLVQATERLRQALG-EVALYRIGTTSFAYLERNERWQEQARQVEGAFA 278 + LG + + LV+ +RLR L + L R+G F L +E A+++ Sbjct: 477 INDTLGHNLGDTLLVELAQRLRAVLRRDDTLSRLGGDEFVLLLPGAN-RESAKKIAQELM 535 Query: 279 RTVE--HQGIPHHLEV--SVGI-VPLSQCTDADELVPSLLTATDVARECGSRRCHYEQPL 333 R + ++ H L V S+GI V + D + L + A A++ G R Y Sbjct: 536 RAINEPYRIGSHELNVMASIGIAVYPADGMDFETLCKNADVAMYRAKQEG--RNAYRSFT 593 Query: 334 GQMQKHS---FELLSAIPAALFSSDQLWLEFQPKVGLLSGQCAGVEALLRWRHPVHGVVS 390 +MQ +S ++L+A+ A+ + +QL + +QP++ L+SG G EALLRW HP G +S Sbjct: 594 QEMQAYSTRYLQVLNALRQAI-AQEQLHVHYQPQISLISGDVIGAEALLRWHHPELGNIS 652 Query: 391 PGLFIPLAEKSALIRQVTLWVLQHGIEQAAAWARQG-RAIPVAINVSARDFDNDDLVQTL 449 P FIP+AE+S LI Q+ WVL+ + QA W + G + +A+N+SA F + L + Sbjct: 653 PAEFIPIAEESGLILQIGEWVLRVAVAQAKKWHQLGLDKLIIAVNLSAVQFRHAGLPNLV 712 Query: 450 AAQLHRHRLPAGLIEIEFTESAMSKHPEKLYSKIQEIKRLGVKVAIDDFGAGFSNLSYLK 509 L P +E+E TE P+ + + + GV+++IDDFG G+S+LSYLK Sbjct: 713 MQILKEEDFPPQYLELELTEGVAMHDPQGAIAMMNSLHERGVRMSIDDFGTGYSSLSYLK 772 Query: 510 NIPADYLKIDQSFIRNMESNYSDQQIVPSMIHLGQKLGFAVVAEGVETERCRRILQHLGC 569 A LKIDQSF+R++ ++ D+ IV ++I + + LG +AEGVET + L+ GC Sbjct: 773 QFKAYKLKIDQSFVRDISTDAEDKAIVSAIIGMAKNLGLQTIAEGVETAEQQAFLREEGC 832 Query: 570 EYGQGYGIARPMSAADTWDWI 590 QGY ++P+ AAD +I Sbjct: 833 HEAQGYHYSKPLPAADFETFI 853 >gi|134096143|ref|YP_001101218.1| hypothetical protein HEAR2987 [Herminiimonas arsenicoxydans] Length = 558 Score = 210 bits (534), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 131/430 (30%), Positives = 216/430 (50%), Gaps = 23/430 (5%) Query: 172 DSLTSLPNRSRLLVDLQSLQALAGSSEVFSDKLTAVAVDICDQVYLGDMIKALGWDYVEG 231 D +T LPNR LL L +Q + S + + V V + + ++ A G+D E Sbjct: 131 DPVTRLPNRHALLKALYDIQKIKSPSHLHA----LVVVSLQNTT---ELKSAFGFDITEA 183 Query: 232 FLVQATERLRQALGEVA-LYRIGTTSFAYLERNERWQE----QARQVEGAFARTVEHQGI 286 + Q+ +R + L + A +YRI L + Q A V+ A + + I Sbjct: 184 VIQQSADRYQGILQDKAGVYRIDPEQLGILIESRDAQVIDILLAALVKSA-QQPYQFNAI 242 Query: 287 PHHLEVSVGIVPLSQCTDADELV-----PSLLTATDVARECGSRRCHYEQPLGQMQKHSF 341 P H++ +G V S+ A EL +L +A + A++C Y + K + Sbjct: 243 PIHVDSRLGYVTFSKVIQAPELYLQRAESALTSANEKAQDC----VAYSPEISNFAKENL 298 Query: 342 ELLSAIPAALFSSDQLWLEFQPKVGLLSGQCAGVEALLRWRHPVHGVVSPGLFIPLAEKS 401 +L + +AL QL + +QPK+ + +G+ GVEAL+RW HP G + PG+FIP AE+S Sbjct: 299 SILGNLMSAL-EEGQLSMHYQPKISIKTGEIHGVEALMRWNHPERGNIPPGIFIPRAEQS 357 Query: 402 ALIRQVTLWVLQHGIEQAAAWARQGRAIPVAINVSARDFDNDDLVQTLAAQLHRHRLPAG 461 LI +T + L+ ++Q W + +A+N+S R+ + L R+ + Sbjct: 358 TLINLITEFALEQAMKQIVEWRENDIHLAIAVNISPRNLLQPGFSDLVLQLLQRYDVSGQ 417 Query: 462 LIEIEFTESAMSKHPEKLYSKIQEIKRLGVKVAIDDFGAGFSNLSYLKNIPADYLKIDQS 521 +E+E TE A+ S++ + + ++IDDFG G+S+L YL +P +KIDQS Sbjct: 418 FLELEVTEGALMTDIAHSISELSRLANAKITISIDDFGTGYSSLQYLHQLPISLIKIDQS 477 Query: 522 FIRNMESNYSDQQIVPSMIHLGQKLGFAVVAEGVETERCRRILQHLGCEYGQGYGIARPM 581 F+R + + IV + + L K+G +AEGVE +R +L LGC+ QG+ I+RP+ Sbjct: 478 FVRRLPDDKGAIHIVEAAVTLAHKMGMRTIAEGVENQRAYTLLADLGCDIAQGFMISRPL 537 Query: 582 SAADTWDWIA 591 AA+ W+A Sbjct: 538 PAAELEKWLA 547 >gi|134094323|ref|YP_001099398.1| putative sensory protein [Herminiimonas arsenicoxydans] Length = 710 Score = 207 bits (526), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 145/420 (34%), Positives = 222/420 (52%), Gaps = 18/420 (4%) Query: 172 DSLTSLPNRSRLLVDLQSLQALAGSSEVFSDKLTAVAVDICDQV-YLGDMIKALGWDYVE 230 D+LT LPNR+ L +Q QA+ S+ LTA+A DQ ++ D +LG + Sbjct: 290 DALTGLPNRTLLYDRMQ--QAVLHSARY--GNLTAIAFLDLDQFKFIND---SLGHQVGD 342 Query: 231 GFLVQATERLRQALGEV-ALYRIGTTSFAYLERNERWQEQ----ARQVEGAFARTVEHQG 285 L +RL L E + R G F L ++ +E ++V A+ G Sbjct: 343 ELLKITAQRLTSCLRESDTVARQGGDEFVLLLTSQPSEESITHTMQRVLHEVAQPWMANG 402 Query: 286 IPHHLEVSVGIVPL-SQCTDADELVPSLLTATDVARECGSRRCHY-EQPLGQMQKHSFEL 343 + + SVG+ DA+ L+ + +A A+E G Y + L Sbjct: 403 LEFRITCSVGVTLCPDDGRDAETLLKNADSAMYKAKELGRNNFQYFATEMNDTATDRLAL 462 Query: 344 LSAIPAALFSSDQLWLEFQPKVGLLSGQCAGVEALLRWRHPVHGVVSPGLFIPLAEKSAL 403 L+ + A+ + + L +QPK+ L +G G EAL+RW + G+VSPG FIPLAE++ L Sbjct: 463 LNRLRQAI-PNHEFVLHYQPKINLANGDIIGAEALIRW-NSAEGMVSPGSFIPLAEETGL 520 Query: 404 IRQVTLWVLQHGIEQAAAWARQGRA-IPVAINVSARDFDNDDLVQTLAAQLHRHRLPAGL 462 I + +WVL+ Q AW G A I +++N+S+R D+V+ + L L A Sbjct: 521 IIPIGVWVLETACRQNRAWQLAGYAPITISVNLSSRQLARGDIVEQVEQVLAETGLEAQY 580 Query: 463 IEIEFTESAMSKHPEKLYSKIQEIKRLGVKVAIDDFGAGFSNLSYLKNIPADYLKIDQSF 522 +E+E TES M+ EK ++ + ++ LGVK+++DDFG G+S+LSYLK P D LKIDQSF Sbjct: 581 LELEITESVMASDVEKSFALLTRLRLLGVKISLDDFGTGYSSLSYLKRFPVDTLKIDQSF 640 Query: 523 IRNMESNYSDQQIVPSMIHLGQKLGFAVVAEGVETERCRRILQHLGCEYGQGYGIARPMS 582 +R++ ++ IV ++I LG L V+AEG+ETE + L C GQGY ++RP+S Sbjct: 641 VRDLATSQDSAAIVKAIISLGHNLNLTVLAEGIETEEQFQFLLKSACNEGQGYLMSRPVS 700 >gi|134094611|ref|YP_001099686.1| hypothetical protein HEAR1387 [Herminiimonas arsenicoxydans] Length = 832 Score = 197 bits (502), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 134/426 (31%), Positives = 218/426 (51%), Gaps = 23/426 (5%) Query: 172 DSLTSLPNRSRLLVDLQSLQALAGSSEVFSDKLTAVAVDICDQVYLGDMIKALGWDYVEG 231 D LT LPNR R LV+ LA + E + +++ + CD + + G D+ + Sbjct: 404 DMLTDLPNR-RYLVN-----TLATAMETSRQQQSSLTMLFCDLDFFKSVNDTHGHDFGDQ 457 Query: 232 FLVQATERLRQALGEVALY-RIGTTSFAYLERNERWQE--QARQVEGAFARTVEHQGIPH 288 L++ ++R+ L E R G F L + + +A+ + A + + + + Sbjct: 458 CLLEISKRIVAVLPESDFVARFGGNEFVILTNSSLAESSIKAKAIARAVSERLVFENVAV 517 Query: 289 HLEVSVGIVPLSQCTDADELVPS-LLTATDVA----RECGSRRCH-YEQPLGQMQKHSFE 342 ++VS+GI LS D VP+ L+ D A +E G R Y+ L Sbjct: 518 KIQVSIGIAQLS----PDHQVPADLIREADAAMYQAKERGRNRTEIYDAALQSKSTKHAR 573 Query: 343 LLSAIPAALFSSDQLWLEFQPKVGLLSGQCAGVEALLRWRHPVHGVVSPGLFIPLAEKSA 402 + A+ AL ++L + +QPKV L+ G G E LLRW P +G++SP FIP+AE S Sbjct: 574 MDVALRFAL-ERNELSVAYQPKVSLVDGSVRGFELLLRWNSPEYGMISPNEFIPIAETSG 632 Query: 403 LIRQVTLWVLQHGIEQAAAWARQGRA---IPVAINVSARDFDNDDLVQTLAAQLHRHRLP 459 ++ + +W ++ Q AAW A I VA+NVS R + + L + Sbjct: 633 MVVPIGMWAMEQACRQLAAWQASYPAMGDITVAVNVSMRQLLHTSFFTQVREILDSSGVV 692 Query: 460 AGLIEIEFTESAMSKHPEKLYSKIQEIKRLGVKVAIDDFGAGFSNLSYLKNIPADYLKID 519 IE+E TE++ +P + + +K LG+++A+DDFG G+S+L+YL+ +P D LKID Sbjct: 693 PHTIELELTETSAMANPLQTIENLALLKNLGLRLALDDFGTGYSSLAYLQKLPIDILKID 752 Query: 520 QSFIRNMESNYSDQQIVPSMIHLGQKLGFAVVAEGVETERCRRILQHLGCEYGQGYGIAR 579 ++F+ + + SD++I+ M+ L Q L VAEGVET LQ +GC+ GQG+ + Sbjct: 753 KTFVHGLGTKQSDREIIRLMMALAQTLNLQTVAEGVETIMHINELQEMGCDLGQGFIFSP 812 Query: 580 PMSAAD 585 P+SA + Sbjct: 813 PLSAEE 818 >gi|134094472|ref|YP_001099547.1| hypothetical protein HEAR1245 [Herminiimonas arsenicoxydans] Length = 715 Score = 191 bits (484), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 141/432 (32%), Positives = 213/432 (49%), Gaps = 26/432 (6%) Query: 172 DSLTSLPNRSRLLVDLQSLQALAGSSEVFSDKLTAVAVDICDQVYLGDMIKALGWDYVEG 231 D+LT LPNR+ LL D L + +E + + +D+ + D +LG + Sbjct: 270 DNLTKLPNRT-LLED--RLNQILHKAERTHTRFALMFIDLDGFKAIND---SLGHHIGDM 323 Query: 232 FLVQATERLRQAL-GEVALYRIGTTSFAYL-ERNERWQEQARQVEGAFARTVEHQGIP-- 287 L++ +R+R ++ + R+G F L E E E A V + P Sbjct: 324 LLIEVAQRIRGSIRAQDTAARLGGDEFVLLIEVTE--PEDAASVADKLCNIINQ---PFE 378 Query: 288 ---HHLEVSVGIVPLSQCTDADELVPSLLTATDVA----RECGSRRCHY-EQPLGQMQKH 339 H L VS V ++ D LL D A + G H+ E + + Sbjct: 379 IDFHTLGVSAS-VGITIYPDDGHTPHDLLVNADAAMYHTKSTGRNGYHFFEASMNANAHN 437 Query: 340 SFELLSAIPAALFSSDQLWLEFQPKVGLLSGQCAGVEALLRWRHPVHGVVSPGLFIPLAE 399 +++ + AL + L +QPK +G G EALLRW+HP G+++P FI LAE Sbjct: 438 QLQVIQDLRLAL-ERKEFKLHYQPKFNTPNGIVVGAEALLRWQHPTRGMIAPDDFIALAE 496 Query: 400 KSALIRQVTLWVLQHGIEQAAAWARQG-RAIPVAINVSARDFDNDDLVQTLAAQLHRHRL 458 K+ LI + WVL Q W +G + VA+N+SA F ND L++ + L R+ Sbjct: 497 KTGLIVPIGEWVLDEACRQMRIWHDEGNQHWKVAVNLSAVQFSNDHLIELVQTTLARNNF 556 Query: 459 PAGLIEIEFTESAMSKHPEKLYSKIQEIKRLGVKVAIDDFGAGFSNLSYLKNIPADYLKI 518 PA + +E TES E + + ++ LG+ ++IDDFG G+S+L YLK +PA LKI Sbjct: 557 PASGLILEVTESTAMHDVEASLTILDKLAGLGIDISIDDFGTGYSSLLYLKRLPATELKI 616 Query: 519 DQSFIRNMESNYSDQQIVPSMIHLGQKLGFAVVAEGVETERCRRILQHLGCEYGQGYGIA 578 D+ FIR++ +D IV ++I LG+ L +VAEGVETE + L+ LGC+ QGY + Sbjct: 617 DRGFIRDLAQGSNDSSIVAAIIALGRSLNLHIVAEGVETEEQQAYLRVLGCDAMQGYLMG 676 Query: 579 RPMSAADTWDWI 590 RPM+ D I Sbjct: 677 RPMAPDQFMDAI 688 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.134 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,081,572 Number of extensions: 42864 Number of successful extensions: 153 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 134 Number of HSP's successfully gapped: 15 Length of query: 594 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 507 Effective length of database: 713,682 Effective search space: 361836774 Effective search space used: 361836774 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)