BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1174.p (575 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 438 e-124 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 408 e-115 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 405 e-114 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 377 e-105 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 360 e-101 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 438 bits (1126), Expect = e-124, Method: Compositional matrix adjust. Identities = 301/588 (51%), Positives = 375/588 (63%), Gaps = 40/588 (6%) Query: 1 MTLSNLKIGTRLYIGFGLVAAILVLLVSVAYVNFARLGAANDMNDHSYEVRAEMRLMLES 60 M NLKIG RL + FGL +LVL+ + + RL E + RL + Sbjct: 1 MQFKNLKIGVRLGMAFGL---LLVLMAFMTVMGVLRLQDVAKATVLMEEATIKERLAQQW 57 Query: 61 LINIETGA-RGFALTGVEASLEPLQQGLAGFKEHYEKARQLTADNSAQQQRLQQ--VADA 117 + IET R FA V S +P Q K ++ ++A S QQ L+ V+ Sbjct: 58 IKGIETNTVRTFAR--VRTS-DPEQD-----KILQQEMSAISAAVSKQQDELETLVVSAE 109 Query: 118 QQRWMSTAIEP---AIALRRAVREGREEMGKLVALAQSGRGKTEMDNMRAVFADMDRAES 174 ++ ++T E A+R V RE G + A + + K D A ++ + Sbjct: 110 GKKLLATVAEKRATYTAIRDDVMNLREARGAELQNAIANKMKPAAD---AYIQSVEAVVN 166 Query: 175 QLLQQRSDAADQLEALTGKT---LIIGGIISVMLAMLLAWWLSNHITRPLAVAVRLARQV 231 + DA +++ + LI+ G++++ L ++LAW L+ IT+PL AV +AR V Sbjct: 167 AQINNFEDAKGRVDTIYQSARMLLIVLGLVALTLGIVLAWMLTRSITKPLDYAVSVARLV 226 Query: 232 AGGDLSACIEVTSRDETGELLAALRDMNASLVRIVSGVRRGTDMIATASSQIASGNLDLS 291 A GDL+ I V S+DETG+LL AL+DMN SL ++ VR G D IATAS+QIASGNLDLS Sbjct: 227 ASGDLTGRITVDSKDETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLS 286 Query: 292 SRTEQQASSLEETASSMEELTSTVQQNSANARQANLMAQAASDIASSGGGVVSRVVQTME 351 SRTE+QASSLEETASSMEELTSTV+QN+ NARQAN +A AS +A GG VVS+VV TM+ Sbjct: 287 SRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMD 346 Query: 352 EINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAA 411 IN S+RKIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSAA Sbjct: 347 GINTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAA 406 Query: 412 AAKEIKALISDSVAKVESGSVLVNEAGDTMREIVDSVQRVTSMINEISAAGEEQRSGIEQ 471 AAKEIK LI DSV KV++GS LV EAG TM E+VDSV+RVT ++ EI AA +EQ +GIEQ Sbjct: 407 AAKEIKTLIDDSVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQ 466 Query: 472 VSQAVGQMDQVTQQNAALVEEAAAASQSLQEQAQELAQAVSIFRLDAQAEQA----PLQS 527 V+QA+GQMDQVTQQNAALVEEAAAA++SL EQA LAQAVSIF+LD A + L Sbjct: 467 VNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAANLAQAVSIFKLDGVANSSRVATRLPV 526 Query: 528 TSSVAPVVKTPAVVPAPVKPRREPRQPRLAAPMSAGAMSGASDDWVTF 575 +S AP + A PAP K E R P+S DDW F Sbjct: 527 AASNAPATRQFAASPAPKKIANETR------PVSG-------DDWEEF 561 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 408 bits (1049), Expect = e-115, Method: Compositional matrix adjust. Identities = 287/577 (49%), Positives = 367/577 (63%), Gaps = 52/577 (9%) Query: 1 MTLSNLKIGTRLYIGFGLVAAILVLLVSVAYVNFARLGAANDMNDHSYEVRAEMRLMLE- 59 M ++NLKIG RL + F A +L+L+ S+ + RL E + RL ++ Sbjct: 1 MKITNLKIGVRLGLAF---AVVLLLMASMMVIGVWRLQEVAQATVRMEEAAEQERLSIQW 57 Query: 60 ----SLINIETGARGFALTGVEASLEPLQQGLAGFKEHYEKARQLTADNSAQQQRLQQVA 115 S I T AR + ++ + +QQ E ++ ++T Q +L+ + Sbjct: 58 HAGNSANAIRTTAR------IRSTNQEVQQQFQN--EMTAQSVEITK----LQNKLESLI 105 Query: 116 DAQQ--RWMSTAIEPAIALRRAVR-EGREEMGKLVALAQSGRGKTEMDNMRAVFADMDRA 172 +++ + MS A+ +R V + R+E+ KL A G E + + + + MD A Sbjct: 106 HSEEGKKLMS-----AVGDKRTVYMDIRKEVFKLKA---DGSPAAEEEAKKIIASKMDPA 157 Query: 173 ESQLLQQRSDAAD--QLEALTGKTLIIGGIISVMLAMLLAWWL------------SNHIT 218 + D D Q+ L KT + S + +L + S IT Sbjct: 158 LETYSKTVQDVVDFQQVTFLEAKTEVDNLYASGRMFLLTLGAIALALSALLAWLLSRSIT 217 Query: 219 RPLAVAVRLARQVAGGDLSACIEVTSRDETGELLAALRDMNASLVRIVSGVRRGTDMIAT 278 RPL AV +AR VAGGDL IEV S DETG+LL ALRDMN LV+ VS VR G + IAT Sbjct: 218 RPLEYAVEVARTVAGGDLRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIAT 277 Query: 279 ASSQIASGNLDLSSRTEQQASSLEETASSMEELTSTVQQNSANARQANLMAQAASDIASS 338 AS+QIA+GNLDLSSRTE+QASSLEETASSMEELTSTV+QN+ NARQAN +A +AS +A Sbjct: 278 ASNQIAAGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEK 337 Query: 339 GGGVVSRVVQTMEEINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 398 GG VVS+VV TME+IN+S++KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVV Sbjct: 338 GGVVVSQVVDTMEDINSSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 397 Query: 399 ATEVRSLAQRSAAAAKEIKALISDSVAKVESGSVLVNEAGDTMREIVDSVQRVTSMINEI 458 A+EVR+LAQRSAAAAKEIK LI DSV KV+ GS LV EAG TM E+V+SV+RVT +++EI Sbjct: 398 ASEVRNLAQRSAAAAKEIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEI 457 Query: 459 SAAGEEQRSGIEQVSQAVGQMDQVTQQNAALVEEAAAASQSLQEQAQELAQAVSIFRLDA 518 AA +EQ +GIEQV+QA+GQMDQVTQQNAALVEEAAAA++SL EQA +LA+AVS+F+LD Sbjct: 458 MAASQEQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKLDG 517 Query: 519 QAEQAPLQST-------SSVAPVVKTPAVVPAPVKPR 548 A P T +S K P PV P+ Sbjct: 518 VAASTPATKTVRKIAAAASHHAPAKRAIAAPTPVSPK 554 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 405 bits (1042), Expect = e-114, Method: Compositional matrix adjust. Identities = 249/400 (62%), Positives = 305/400 (76%), Gaps = 20/400 (5%) Query: 188 EALTGK-TLIIGGIISVMLAMLLAWWLSNHITRPLAVAVRLARQVAGGDLSACIEVT-SR 245 + L+G+ LIIG +I+++L L+AW L+ ITRPL A+++A VA GDL+A ++ ++ Sbjct: 184 DYLSGRMALIIGAVIAILLGTLIAWRLTVGITRPLHEALKVAESVAEGDLTARSDMAETQ 243 Query: 246 DETGELLAALRDMNASLVRIVSGVRRGTDMIATASSQIASGNLDLSSRTEQQASSLEETA 305 DE G LL+AL M A+LVR V+ +R GTD IATASS+IASGNLDLSSRTEQQASSLEETA Sbjct: 244 DEPGLLLSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSSRTEQQASSLEETA 303 Query: 306 SSMEELTSTVQQNSANARQANLMAQAASDIASSGGGVVSRVVQTMEEINASSRKIVDIIS 365 SSMEELTSTV+QN+ N+RQAN +A AAS +A GG VVS+VV TM IN S++KIVDII Sbjct: 304 SSMEELTSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAINNSAKKIVDIIG 363 Query: 366 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALISDSVA 425 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVR+LAQRSAAAAKEIK LI DSV Sbjct: 364 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKTLIGDSVE 423 Query: 426 KVESGSVLVNEAGDTMREIVDSVQRVTSMINEISAAGEEQRSGIEQVSQAVGQMDQVTQQ 485 KV++GS LV EAG TM EIVD V+RV ++ EI+AA +EQ GIEQV+QAV QMDQVTQQ Sbjct: 424 KVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAVSQMDQVTQQ 483 Query: 486 NAALVEEAAAASQSLQEQAQELAQAVSIFRLD---AQAEQA---PLQSTSS----VAPVV 535 NAALVEEAAAA++SLQ+QA+ LA+AVS+FR+ A A+ A +QST+ APV Sbjct: 484 NAALVEEAAAAAESLQDQARNLAEAVSVFRVGSGYATAQSAAPRTVQSTAMHKPLAAPVK 543 Query: 536 KTPAVVPAPVKPRREPRQPRLAAPMSAGAMSGASDDWVTF 575 K+ + V ++ P+ P++AG DDW F Sbjct: 544 KSSSSSSLTVTESKKVAAPK---PVAAGG-----DDWEEF 575 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 377 bits (967), Expect = e-105, Method: Compositional matrix adjust. Identities = 271/602 (45%), Positives = 361/602 (59%), Gaps = 60/602 (9%) Query: 3 LSNLKIGTRLYIGFGLVAAILVLLVSVAYVNFARLGAANDMNDHSYEVRAEMRLMLESLI 62 L N+ I + L G+++ +LL++ + L N YE R L ++I Sbjct: 2 LKNITIKSLLLFVMGILS---LLLIATGILGLTSLDTTNKALRSVYEDRTVPIGQLNTVI 58 Query: 63 NIET-----------GARGFALT---GVEASLEPLQQGLAGF-KEHYEKARQLTADNSAQ 107 + T G G + +E + + Q F ++ AD A Sbjct: 59 TLSTINQLDLAASIYGDPGLVIPKMDAIEKHSKEINQAFDAFMASTLTPEAKVLADKFAA 118 Query: 108 QQRLQQVADAQQRWMSTAIEPAIALRRAVREGREEMGKLVALAQSGRGKTE--MDNMRAV 165 +++ ++ A++PAIA R G ++ + + G E + +RA Sbjct: 119 DRKI---------FLEKALQPAIAASRG--------GNVLRVTEIVNGPMEELITPVRAG 161 Query: 166 FA---DMDRAESQLLQQRSDAADQLEALTGKTLIIGGII-SVMLAMLLAWWLSNHITRPL 221 A D++ E++ + S Q + + + IG II V+LA +A+WL I RPL Sbjct: 162 VAALIDLELREAKKAFEES----QTRFVMVRNISIGAIIFGVLLAGFMAFWLIRLIARPL 217 Query: 222 AVAVRLARQVAGGDLSACIEVTSRDETGELLAALRDMNASLVRIVSGVRRGTDMIATASS 281 AV++AR VA GDL+ I V S +ETG+LL AL+DMN SL + VS VRRGT+ I AS Sbjct: 218 HDAVQIARSVAAGDLTQQIHVNSTNETGQLLQALKDMNDSLSKTVSAVRRGTETITVASG 277 Query: 282 QIASGNLDLSSRTEQQASSLEETASSMEELTSTVQQNSANARQANLMAQAASDIASSGGG 341 +IASGN DLSSRTE QA SLEETASSMEELTSTV+QN+ NARQAN + +A+++A GG Sbjct: 278 EIASGNADLSSRTEAQAGSLEETASSMEELTSTVRQNADNARQANQLVVSATEVAVKGGS 337 Query: 342 VVSRVVQTMEEINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATE 401 VVS VV TM I SSRKIVDII VID IAFQTNILALNAAVEAARAGEQGRGFAVVA+E Sbjct: 338 VVSEVVITMGSIKDSSRKIVDIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASE 397 Query: 402 VRSLAQRSAAAAKEIKALISDSVAKVESGSVLVNEAGDTMREIVDSVQRVTSMINEISAA 461 VR+LAQRSA AAKEIKALI DSV KV++GS LV++AG TM+EIV SV+ V +++EI++A Sbjct: 398 VRNLAQRSAGAAKEIKALIDDSVHKVDAGSKLVDQAGSTMQEIVTSVKHVADIMSEITSA 457 Query: 462 GEEQRSGIEQVSQAVGQMDQVTQQNAALVEEAAAASQSLQEQAQELAQAVSIFRLDAQAE 521 +EQ GIEQV+QA+ QMD++TQQNAALVE+AAAA+QS+Q+QA EL+ AV+IF+LDA Sbjct: 458 SQEQSDGIEQVNQAISQMDEMTQQNAALVEQAAAAAQSMQDQAVELSGAVAIFKLDAGGS 517 Query: 522 QAPLQSTSSVA--------PVVKTPAVVPAPVKPRREPRQPRLAAPMSAGAMSGASDDWV 573 +++ A P + A+ AP K Q ++A S DDW Sbjct: 518 AMSTSASTRRAAPALQAANPATTSRALTAAPHKQLETKPQKPISADKSG-------DDWE 570 Query: 574 TF 575 F Sbjct: 571 EF 572 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 360 bits (925), Expect = e-101, Method: Compositional matrix adjust. Identities = 233/455 (51%), Positives = 303/455 (66%), Gaps = 34/455 (7%) Query: 134 RAVREGREEMGKLVALAQSGRGKTEMD----NMRAVFADMDRAESQL--LQQRSDAADQL 187 + +R +E L+A ++GR + D M +F + ++ +L LQ +S A Sbjct: 121 KRIRYLKEAEQGLIAALRAGRNEEVEDILVNKMPPLFQSLTKSTDELVELQMKSAATGYQ 180 Query: 188 EALT-GKTLIIGGIISVMLAML----LAWWLSNHITRPLAVAVRLARQVAGGDLSACIEV 242 ++ T I ++ V+L ++ A++L IT PL + +A GDL++ IEV Sbjct: 181 DSQTLFHYFRIIAVVGVLLGLIGVAIYAFFLIRAITGPLKEMLLHFDTIASGDLTSNIEV 240 Query: 243 TSRDETGELLAALRDMNASLVRIVSGVRRGTDMIATASSQIASGNLDLSSRTEQQASSLE 302 SR+E G L+ L+ M L V+ VR G+ I+TA+++IA+GNLDLSSRTEQQA+SLE Sbjct: 241 KSRNEMGTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLSSRTEQQAASLE 300 Query: 303 ETASSMEELTSTVQQNSANARQANLMAQAASDIASSGGGVVSRVVQTMEEINASSRKIVD 362 ETASSMEELTSTV+QN+ NARQAN +A +AS +A GG VVS VV TM+ IN S+RKIVD Sbjct: 301 ETASSMEELTSTVKQNTDNARQANQLATSASAVAVKGGAVVSDVVNTMDAINTSARKIVD 360 Query: 363 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALISD 422 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSAAAAKEIK LI D Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKHLIDD 420 Query: 423 SVAKVESGSVLVNEAGDTMREIVDSVQRVTSMINEISAAGEEQRSGIEQVSQAVGQMDQV 482 SV KV++G+ LV EAG TM E+VDSV+RVT +++EI AA +EQ +GIEQV+ A+ QMD+V Sbjct: 421 SVNKVDAGTRLVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQVNTAIVQMDEV 480 Query: 483 TQQNAALVEEAAAASQSLQEQAQELAQAVSIFRLDAQAEQAPLQSTSSVAPVVKTPAVVP 542 TQQNAALVE+AAAA+ SL++QA L+ VS+F+L Q Q+ P Sbjct: 481 TQQNAALVEQAAAAASSLRDQATNLSTVVSVFKL--QGHQSA-----------------P 521 Query: 543 APVKPRREPR--QPRLAAPMSAGAMSGASDDWVTF 575 + P+ P+ + R AA G G DW F Sbjct: 522 QNLVPQARPKALESRPAAIAHTG--KGNDGDWEQF 554 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.313 0.125 0.324 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 633,537 Number of extensions: 18450 Number of successful extensions: 179 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 126 Number of HSP's successfully gapped: 16 Length of query: 575 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 488 Effective length of database: 713,682 Effective search space: 348276816 Effective search space used: 348276816 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 131 (55.1 bits)