BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1172.p (577 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 477 e-136 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 454 e-129 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 436 e-123 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 409 e-115 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 407 e-115 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 477 bits (1227), Expect = e-136, Method: Compositional matrix adjust. Identities = 306/587 (52%), Positives = 395/587 (67%), Gaps = 36/587 (6%) Query: 1 MKIRDIKISVRLGVCFAALIAVMCVIAVVGVKSLWVVSDATDEIVSDRYVKVALVNQI-- 58 M+ +++KI VRLG+ F L+ +M + V+GV L V+ AT ++ + +K L Q Sbjct: 1 MQFKNLKIGVRLGMAFGLLLVLMAFMTVMGVLRLQDVAKAT-VLMEEATIKERLAQQWIK 59 Query: 59 GEKVNTAARALRNAIIAPDQATADKYVERAVNN-TREVNDLMADLEKRLNTAKGKEVFVK 117 G + NT R P+Q DK +++ ++ + V+ +LE + +A+GK++ Sbjct: 60 GIETNTVRTFARVRTSDPEQ---DKILQQEMSAISAAVSKQQDELETLVVSAEGKKLLAT 116 Query: 118 LQEARSSYAKPRDKIIELIRQRKTAETTDYLFKEVIPAQDKYFAALKDMTTFQVAMMEQG 177 + E R++Y RD ++ L R+ + AE + + ++ PA D Y +++ + Q+ E Sbjct: 117 VAEKRATYTAIRDDVMNL-REARGAELQNAIANKMKPAADAYIQSVEAVVNAQINNFEDA 175 Query: 178 VAQSDAASANAVNTMVVLSAVAVLLSVLAAFLITRSITRPLNEAVQVATAVAAGDLTVQI 237 + D +A ++VL VA+ L ++ A+++TRSIT+PL+ AV VA VA+GDLT +I Sbjct: 176 KGRVDTIYQSARMLLIVLGLVALTLGIVLAWMLTRSITKPLDYAVSVARLVASGDLTGRI 235 Query: 238 AATSKDETGVLLASLKAMNDNLHRIVSLVREGTDTINTASSEIASGNLDLSSRTEEQAGA 297 SKDETG LL +LK MND+L ++ VR G DTI TAS++IASGNLDLSSRTEEQA + Sbjct: 236 TVDSKDETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQASS 295 Query: 298 LEETASAMEELTSTVKQNADNARQANTLAETASQVAIQGGSVVSEVVQTMGQINDASRKI 357 LEETAS+MEELTSTVKQNADNARQAN LA TAS VA +GG+VVS+VV TM IN ++RKI Sbjct: 296 LEETASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTSARKI 355 Query: 358 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKGLI 417 VDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAAAKEIK LI Sbjct: 356 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLI 415 Query: 418 DTSVERVDNGSRLVEQAGNTMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMD 477 D SV++VD GS+LV +AG TM EVV SVKRVTD++AEI AAS EQS GIEQ+NQAI QMD Sbjct: 416 DDSVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIGQMD 475 Query: 478 EVTQQNAALVEEAAAAAQSLQEQSGRLVETVSIFKLSS-HDQQRAAAPAAAPRTQRTVDV 536 +VTQQNAALVEEAAAAA+SL EQ+ L + VSIFKL + R A Sbjct: 476 QVTQQNAALVEEAAAAAESLNEQAANLAQAVSIFKLDGVANSSRVA-------------- 521 Query: 537 TPRPAALPRKPAARPSSAASAPA-----SRPTMQAAAAVDG-DWEQF 577 T P A PA R +A+ AP +RP V G DWE+F Sbjct: 522 TRLPVAASNAPATRQFAASPAPKKIANETRP-------VSGDDWEEF 561 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 454 bits (1169), Expect = e-129, Method: Compositional matrix adjust. Identities = 291/591 (49%), Positives = 403/591 (68%), Gaps = 30/591 (5%) Query: 1 MKIRDIKISVRLGVCFAALIAVMCVIAVVGVKSLWVVSDATDEIVSDRYV--KVALVNQI 58 M+I ++KI RLG+ F ++ ++ + G+ L ++ A+ +V D K A + Sbjct: 1 MRIANMKIGTRLGLGFGLILLLVAAMGATGIMRLENINGASRHLVDDSLSMQKSAQNWLL 60 Query: 59 GEKVNTAARALRNAIIAPDQATADKYVERAVN-NTREVNDLMADLEKRLNTAKGKEVFVK 117 G VN A+R L A++ + ++ ++A+ ++++ ++ +E R+N+ K KE+F + Sbjct: 61 GTSVN-ASRTL--ALVKASDPESQEFFQKAITAQSKQITEIQKSIEDRINSDKEKELFAE 117 Query: 118 LQEARSSYAKPRDKIIELIRQRKTAETTDYLFKEVIPAQDKYFAALKDMTTF---QVAMM 174 + + RS+Y R I+ + AE + +++PA D Y ++K++ +V + Sbjct: 118 VAKKRSAYIDIRKSILGVKAGGNIAEANQMIDTKMVPALDAYVDSVKNVLGHYENEVKLA 177 Query: 175 EQGVAQSDAASANAVNTMVVLSAVAVLLSVLAAFLITRSITRPLNEAVQVATAVAAGDLT 234 ++ + + A +++ + +A+LL L A+ +T ITRPL+EA++VA +VA GDLT Sbjct: 178 DESITDDYLSGRMA---LIIGAVIAILLGTLIAWRLTVGITRPLHEALKVAESVAEGDLT 234 Query: 235 VQI-AATSKDETGVLLASLKAMNDNLHRIVSLVREGTDTINTASSEIASGNLDLSSRTEE 293 + A ++DE G+LL++L M NL R V+ +R GTDTI TASSEIASGNLDLSSRTE+ Sbjct: 235 ARSDMAETQDEPGLLLSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSSRTEQ 294 Query: 294 QAGALEETASAMEELTSTVKQNADNARQANTLAETASQVAIQGGSVVSEVVQTMGQINDA 353 QA +LEETAS+MEELTSTVKQNADN+RQAN LA AS VA++GG+VVS+VV TMG IN++ Sbjct: 295 QASSLEETASSMEELTSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAINNS 354 Query: 354 SRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEI 413 ++KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRSAAAAKEI Sbjct: 355 AKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEI 414 Query: 414 KGLIDTSVERVDNGSRLVEQAGNTMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAI 473 K LI SVE+VD GS+LV +AG TM+E+V VKRV D++AEITAAS EQSDGIEQ+NQA+ Sbjct: 415 KTLIGDSVEKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAV 474 Query: 474 VQMDEVTQQNAALVEEAAAAAQSLQEQSGRLVETVSIFKLSSHDQQRAAAPAAAPRTQRT 533 QMD+VTQQNAALVEEAAAAA+SLQ+Q+ L E VS+F++ S A A +AAPRT ++ Sbjct: 475 SQMDQVTQQNAALVEEAAAAAESLQDQARNLAEAVSVFRVGSG---YATAQSAAPRTVQS 531 Query: 534 VDVTPRPAALPRKPAAR-------PSSAASAPASRPTMQAAAAVDGDWEQF 577 +P A P K ++ S +AP +P AA DWE+F Sbjct: 532 T-AMHKPLAAPVKKSSSSSSLTVTESKKVAAP--KPV----AAGGDDWEEF 575 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 436 bits (1120), Expect = e-123, Method: Compositional matrix adjust. Identities = 296/586 (50%), Positives = 381/586 (65%), Gaps = 30/586 (5%) Query: 1 MKIRDIKISVRLGVCFAALIAVMCVIAVVGVKSLWVVSDAT---DEIVSDRYVKVALVNQ 57 MKI ++KI VRLG+ FA ++ +M + V+GV L V+ AT +E + + Sbjct: 1 MKITNLKIGVRLGLAFAVVLLLMASMMVIGVWRLQEVAQATVRMEEAAEQERLSIQW--- 57 Query: 58 IGEKVNTAARALRNA--IIAPDQATADKYVERAVNNTREVNDLMADLEKRLNTAKGKEVF 115 +A A+R I + +Q ++ + E+ L LE +++ +GK++ Sbjct: 58 ---HAGNSANAIRTTARIRSTNQEVQQQFQNEMTAQSVEITKLQNKLESLIHSEEGKKLM 114 Query: 116 VKLQEARSSYAKPRDKIIELIRQRKTA---ETTDYLFKEVIPAQDKYFAALKDMTTFQVA 172 + + R+ Y R ++ +L A E + ++ PA + Y ++D+ FQ Sbjct: 115 SAVGDKRTVYMDIRKEVFKLKADGSPAAEEEAKKIIASKMDPALETYSKTVQDVVDFQQV 174 Query: 173 MMEQGVAQSDAASANAVNTMVVLSAVAVLLSVLAAFLITRSITRPLNEAVQVATAVAAGD 232 + + D A+ ++ L A+A+ LS L A+L++RSITRPL AV+VA VA GD Sbjct: 175 TFLEAKTEVDNLYASGRMFLLTLGAIALALSALLAWLLSRSITRPLEYAVEVARTVAGGD 234 Query: 233 LTVQIAATSKDETGVLLASLKAMNDNLHRIVSLVREGTDTINTASSEIASGNLDLSSRTE 292 L +I S DETG LL +L+ MND L + VS VR G +TI TAS++IA+GNLDLSSRTE Sbjct: 235 LRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQIAAGNLDLSSRTE 294 Query: 293 EQAGALEETASAMEELTSTVKQNADNARQANTLAETASQVAIQGGSVVSEVVQTMGQIND 352 EQA +LEETAS+MEELTSTVKQNADNARQAN LA +AS VA +GG VVS+VV TM IN Sbjct: 295 EQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVVVSQVVDTMEDINS 354 Query: 353 ASRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKE 412 +++KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSAAAAKE Sbjct: 355 SAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKE 414 Query: 413 IKGLIDTSVERVDNGSRLVEQAGNTMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQA 472 IK LI SV++VD GS+LV +AG TMEEVV SVKRVTD+++EI AAS EQS GIEQ+NQA Sbjct: 415 IKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAASQEQSAGIEQVNQA 474 Query: 473 IVQMDEVTQQNAALVEEAAAAAQSLQEQSGRLVETVSIFKLSSHDQQRAAAPAAAPRTQR 532 I QMD+VTQQNAALVEEAAAAA+SL EQ+G+L E VS+FKL AA A +T R Sbjct: 475 IGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKLDG-----VAASTPATKTVR 529 Query: 533 TVDVTPRPAALPRKPAARPSSAASAPASRPTMQAAAAVDGD-WEQF 577 + A ++ A P+ P S P AA GD WE+F Sbjct: 530 KIAAAASHHAPAKRAIAAPT-----PVS-PK----AATGGDEWEEF 565 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 409 bits (1051), Expect = e-115, Method: Compositional matrix adjust. Identities = 245/382 (64%), Positives = 286/382 (74%), Gaps = 10/382 (2%) Query: 199 AVLLSVLAAFLITRSITRPLNEAVQVATAVAAGDLTVQIAATSKDETGVLLASLKAMNDN 258 VLL+ AF + R I RPL++AVQ+A +VAAGDLT QI S +ETG LL +LK MND+ Sbjct: 198 GVLLAGFMAFWLIRLIARPLHDAVQIARSVAAGDLTQQIHVNSTNETGQLLQALKDMNDS 257 Query: 259 LHRIVSLVREGTDTINTASSEIASGNLDLSSRTEEQAGALEETASAMEELTSTVKQNADN 318 L + VS VR GT+TI AS EIASGN DLSSRTE QAG+LEETAS+MEELTSTV+QNADN Sbjct: 258 LSKTVSAVRRGTETITVASGEIASGNADLSSRTEAQAGSLEETASSMEELTSTVRQNADN 317 Query: 319 ARQANTLAETASQVAIQGGSVVSEVVQTMGQINDASRKIVDIISVIDGIAFQTNILALNA 378 ARQAN L +A++VA++GGSVVSEVV TMG I D+SRKIVDII VID IAFQTNILALNA Sbjct: 318 ARQANQLVVSATEVAVKGGSVVSEVVITMGSIKDSSRKIVDIIGVIDSIAFQTNILALNA 377 Query: 379 AVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKGLIDTSVERVDNGSRLVEQAGNTM 438 AVEAARAGEQGRGFAVVASEVR LAQRSA AAKEIK LID SV +VD GS+LV+QAG+TM Sbjct: 378 AVEAARAGEQGRGFAVVASEVRNLAQRSAGAAKEIKALIDDSVHKVDAGSKLVDQAGSTM 437 Query: 439 EEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVTQQNAALVEEAAAAAQSLQ 498 +E+V SVK V D+++EIT+AS EQSDGIEQ+NQAI QMDE+TQQNAALVE+AAAAAQS+Q Sbjct: 438 QEIVTSVKHVADIMSEITSASQEQSDGIEQVNQAISQMDEMTQQNAALVEQAAAAAQSMQ 497 Query: 499 EQSGRLVETVSIFKL---SSHDQQRAAAPAAAPRTQRTVDVTPRPAALPRKPAARPSSAA 555 +Q+ L V+IFKL S A+ AAP Q PA R A P Sbjct: 498 DQAVELSGAVAIFKLDAGGSAMSTSASTRRAAPALQ-----AANPATTSRALTAAPHKQL 552 Query: 556 SAPASRPTMQAAAAVDGDWEQF 577 +P +A DWE+F Sbjct: 553 ETKPQKPI--SADKSGDDWEEF 572 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 407 bits (1045), Expect = e-115, Method: Compositional matrix adjust. Identities = 265/583 (45%), Positives = 359/583 (61%), Gaps = 38/583 (6%) Query: 3 IRDIKISVRLGVCFAALIAVMCVIAVVGVKSLWVVSDATDEIVSDRYVKVALVNQIGEKV 62 +++I I RL + + ++ V +G+ + ++ I ++ ++ + ++ Sbjct: 2 LKNISIKFRLLLTMVFMGMMLIVGGAMGILGVQTTNNTLQNIYVNQMPSSEAIHSMMTRL 61 Query: 63 NTAARALRNAIIAPDQATADKYVERAVN-NTREVNDLMADLEKRLNTAKGKEVFVKLQEA 121 A L + P + +++ ++RA N + + L + T + ++V ++ Sbjct: 62 LQARAGLNLVAMRPHEEGSERILKRAENFYLQSEEEWKKYLSLPIETLEERKVADEVTAK 121 Query: 122 RSSYAKPRDK-IIELIRQRKTAETTDYLFKEVIPAQDKYFAALKDMTTFQVAMMEQGVAQ 180 R Y K ++ +I +R + E D L ++ P F +L T V + + A Sbjct: 122 RIRYLKEAEQGLIAALRAGRNEEVEDILVNKMPP----LFQSLTKSTDELVELQMKSAAT 177 Query: 181 SDAASANAVNTMVVLSAVAVLLSVLA----AFLITRSITRPLNEAVQVATAVAAGDLTVQ 236 S + +++ V VLL ++ AF + R+IT PL E + +A+GDLT Sbjct: 178 GYQDSQTLFHYFRIIAVVGVLLGLIGVAIYAFFLIRAITGPLKEMLLHFDTIASGDLTSN 237 Query: 237 IAATSKDETGVLLASLKAMNDNLHRIVSLVREGTDTINTASSEIASGNLDLSSRTEEQAG 296 I S++E G L+ L+ M L V+ VREG+ I+TA++EIA+GNLDLSSRTE+QA Sbjct: 238 IEVKSRNEMGTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLSSRTEQQAA 297 Query: 297 ALEETASAMEELTSTVKQNADNARQANTLAETASQVAIQGGSVVSEVVQTMGQINDASRK 356 +LEETAS+MEELTSTVKQN DNARQAN LA +AS VA++GG+VVS+VV TM IN ++RK Sbjct: 298 SLEETASSMEELTSTVKQNTDNARQANQLATSASAVAVKGGAVVSDVVNTMDAINTSARK 357 Query: 357 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKGL 416 IVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAAAKEIK L Sbjct: 358 IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKHL 417 Query: 417 IDTSVERVDNGSRLVEQAGNTMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQM 476 ID SV +VD G+RLV +AG TM EVV SVKRVTD+++EI AAS EQS GIEQ+N AIVQM Sbjct: 418 IDDSVNKVDAGTRLVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQVNTAIVQM 477 Query: 477 DEVTQQNAALVEEAAAAAQSLQEQSGRLVETVSIFKLSSHDQQRAAAPAAAPRTQRTVDV 536 DEVTQQNAALVE+AAAAA SL++Q+ L VS+FKL H +AP+ ++ Sbjct: 478 DEVTQQNAALVEQAAAAASSLRDQATNLSTVVSVFKLQGHQ--------SAPQ-----NL 524 Query: 537 TP--RPAALPRKPAARPSSAASAPASRPTMQAAAAVDGDWEQF 577 P RP AL +PAA + DGDWEQF Sbjct: 525 VPQARPKALESRPAAIAHTGKGN-------------DGDWEQF 554 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.312 0.124 0.318 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 691,117 Number of extensions: 21602 Number of successful extensions: 198 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 135 Number of HSP's successfully gapped: 15 Length of query: 577 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 490 Effective length of database: 713,682 Effective search space: 349704180 Effective search space used: 349704180 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)