BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1171.p
         (141 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein...   112   7e-27
gi|134095859|ref|YP_001100934.1| hypothetical protein HEAR2691 [...    95   2e-21
gi|134093839|ref|YP_001098914.1| hypothetical protein HEAR0586 [...    72   8e-15
gi|134096466|ref|YP_001101541.1| putative signal peptide [Hermin...    72   1e-14
gi|134094022|ref|YP_001099097.1| hypothetical protein HEAR0777 [...    69   8e-14

>gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein
           [Herminiimonas arsenicoxydans]
          Length = 519

 Score =  112 bits (280), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 53/110 (48%), Positives = 79/110 (71%)

Query: 15  ASRSESALSLVMFDVDFFKKYNDLYGHIQGDYCPQDIARTVRSAQRCHGDLAARYGGEEF 74
           A R++++L+L+M DVD FKKYND YGH QGD C ++I++ +++A    GDL ARYGGEEF
Sbjct: 372 AMRNQTSLALIMLDVDHFKKYNDRYGHPQGDECLKEISKILKTATARTGDLVARYGGEEF 431

Query: 75  VLLLPDTDLAGAHRLAQKVVDDVRALKIPYEGNAAGVVTLSARVASCVPR 124
           V+LLP TD AGA  +A++V   ++AL + +     G+VT S  +A+ +P+
Sbjct: 432 VILLPGTDRAGAAAVAERVRLAIQALNMEHAETPDGIVTASLGIAALIPQ 481


>gi|134095859|ref|YP_001100934.1| hypothetical protein HEAR2691
           [Herminiimonas arsenicoxydans]
          Length = 280

 Score = 94.7 bits (234), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 74/119 (62%), Gaps = 1/119 (0%)

Query: 6   NLMKLALQHASRSESALSLVMFDVDFFKKYNDLYGHIQGDYCPQDIARTVRSAQRCHGDL 65
           ++M     +A  +   LS++M D+D+FK+YND YGHIQGD C + +A  + SA R   D 
Sbjct: 130 SIMAAEWANAKLNHQPLSVIMLDIDYFKQYNDHYGHIQGDDCLKRVANILSSATRRSRDF 189

Query: 66  AARYGGEEFVLLLPDTDLAGAHRLAQKVVDDVRALKIPYEGNAA-GVVTLSARVASCVP 123
            AR+GGEEF+L+LP+TD   A  +A++    +   KIP+E +    ++T+S  V + +P
Sbjct: 190 FARFGGEEFILVLPETDELNAINIAERCRTLICKEKIPHEKSEVIPMITVSLGVGTVIP 248


>gi|134093839|ref|YP_001098914.1| hypothetical protein HEAR0586
           [Herminiimonas arsenicoxydans]
          Length = 322

 Score = 72.4 bits (176), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 12/113 (10%)

Query: 13  QHASRSESALSLVMFDVDFFKKYNDLYGHIQGDYCPQDIARTVRSAQRCHGDLAARYGGE 72
            HA R    LSL+M D+D+FKK+ND YGH  GD+  +  A  + +A R   D A RYGGE
Sbjct: 187 HHAGRP---LSLIMIDLDYFKKFNDQYGHQMGDHALRVAAGVLNAALRP-SDFAVRYGGE 242

Query: 73  EFVLLLPDTDLAGAHRLAQKVVDDVRA--------LKIPYEGNAAGVVTLSAR 117
           E  ++LPD++      +AQ++ + +R         + +P+   + G+ TL A+
Sbjct: 243 ELTVILPDSNATTGRMVAQRLCERMREAVVFEDMHVPLPHLTASFGIATLDAQ 295


>gi|134096466|ref|YP_001101541.1| putative signal peptide
           [Herminiimonas arsenicoxydans]
          Length = 492

 Score = 71.6 bits (174), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 1/83 (1%)

Query: 11  ALQHASRSESALSLVMFDVDFFKKYNDLYGHIQGDYCPQDIARTVRSAQRCHGDLAARYG 70
           A+  + R    LS ++FD+DFFK  ND +GH+ GD   Q IA   ++A R   D+  R+G
Sbjct: 344 AILDSERRRIPLSAILFDIDFFKMVNDNHGHLAGDRILQSIAAITKNAVR-ESDIVTRWG 402

Query: 71  GEEFVLLLPDTDLAGAHRLAQKV 93
           GEEF++LL D  L  A  LA+K+
Sbjct: 403 GEEFLVLLKDCPLEQATALAEKI 425


>gi|134094022|ref|YP_001099097.1| hypothetical protein HEAR0777
           [Herminiimonas arsenicoxydans]
          Length = 568

 Score = 69.3 bits (168), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 17  RSESALSLVMFDVDFFKKYNDLYGHIQGDYCPQDIARTVRSAQRCHGDLAARYGGEEFVL 76
           RS+    ++M DVDFFK+ ND+YGH  GD   + +A ++ SA     D   R+GGEEF+ 
Sbjct: 429 RSKIPYCILMLDVDFFKRVNDIYGHGVGDEVLKHVA-SILSATVRKTDFVGRHGGEEFLS 487

Query: 77  LLPDTDLAGAHRLAQKVVDDVRALKIPYEGN 107
           +LP TD + A  +A+K+ + + +  I   GN
Sbjct: 488 ILPMTDSSAAMVVAEKIRNTIESTPIGPVGN 518


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 249,870
Number of extensions: 9144
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 23
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 23
Length of query: 141
Length of database: 1,000,347
Length adjustment: 73
Effective length of query: 68
Effective length of database: 759,812
Effective search space: 51667216
Effective search space used: 51667216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 124 (52.4 bits)