BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1169.p
         (116 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095008|ref|YP_001100083.1| hypothetical protein HEAR1803 [...    75   9e-16

>gi|134095008|ref|YP_001100083.1| hypothetical protein HEAR1803
           [Herminiimonas arsenicoxydans]
          Length = 116

 Score = 75.1 bits (183), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 56/112 (50%)

Query: 4   IQRFNTNARMSQLVTANGFAFVAGQVPNNAGAPIPQQASEVLAKIDAQLQAQGIGRERIV 63
           I R +    +S++   NG  ++AGQ+  +    I  Q  EVL  ID  L   G  + RI+
Sbjct: 3   ITRLHIGDTLSEVAIHNGTVYLAGQIAEDTTQNIQDQTREVLGHIDRLLAEAGSDKTRIL 62

Query: 64  SANVWLSSPEHFAAFNAVWDAWVPAGHAPTRACVQALLMAPGLDVEVAVIAA 115
           S  ++++    F   NA W+ WVP GHAP RA V          +E+ V+AA
Sbjct: 63  SCQIFIADSNDFDGMNAAWNEWVPEGHAPPRATVAVQFPDSRRLIEIIVVAA 114


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.130    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 226,725
Number of extensions: 8087
Number of successful extensions: 28
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 116
Length of database: 1,000,347
Length adjustment: 70
Effective length of query: 46
Effective length of database: 769,697
Effective search space: 35406062
Effective search space used: 35406062
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 123 (52.0 bits)