BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1166.p
         (205 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095878|ref|YP_001100953.1| multidrug efflux pump transcrip...    65   3e-12

>gi|134095878|ref|YP_001100953.1| multidrug efflux pump
           transcriptional repressor [Herminiimonas arsenicoxydans]
          Length = 212

 Score = 64.7 bits (156), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 81/172 (47%)

Query: 7   KTRAILLDAALAAFARRGVRATTLEHVAASADFTRGAVYWHFPDKTALVKAVFEELVWPF 66
           +TR+ ++DAA   F  RG+  +TL  VA +AD TRGA+YWHF +K  L  A+ E +  P 
Sbjct: 11  ETRSRIIDAAEEVFHARGLAQSTLSDVALAADVTRGAIYWHFKNKGDLFDAMCERVRLPL 70

Query: 67  DLGPDLAVYRQSEQPMLLLREVLWLKMLDCLRDVRQRRRMEVVLRYRGTPELPEELAARL 126
           +        + +  P+  LR      M + + D R R+ ++++       +  + +  R 
Sbjct: 71  ESLAATPFEQYAHNPLGHLRNTWVAFMKNVVSDTRSRKVLDIIFLRSELVDRDDPIWVRQ 130

Query: 127 DTLSLQALDHLTAVLNIAYERGELRRGLTPIDVARCLVAACMGVIAEHMEDP 178
                + LD++  +L  A    +L + L     A  L +  +G++   +  P
Sbjct: 131 QHCYEKGLDNMERILKEAVALDQLPKDLDTRLAAISLHSHVIGLLMNWLFSP 182


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.325    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 353,375
Number of extensions: 13173
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 128
Effective length of database: 746,632
Effective search space: 95568896
Effective search space used: 95568896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)