BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1165.p (503 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095560|ref|YP_001100635.1| outer membrane transport protei... 418 e-118 gi|134095881|ref|YP_001100956.1| outer membrane transport protei... 398 e-112 gi|134095761|ref|YP_001100836.1| putative outer membrane transpo... 356 1e-99 gi|134094170|ref|YP_001099245.1| putative outer membrane protein... 133 2e-32 gi|134093330|ref|YP_001098405.1| putative outer membrane efflux ... 126 3e-30 >gi|134095560|ref|YP_001100635.1| outer membrane transport protein involved toxic tolerance [Herminiimonas arsenicoxydans] Length = 476 Score = 418 bits (1075), Expect = e-118, Method: Compositional matrix adjust. Identities = 231/485 (47%), Positives = 318/485 (65%), Gaps = 24/485 (4%) Query: 18 QPRARLLPLLLAVLLGGCTLM-PDYHRPDAPVAARF--------AGDN---SAPAAQSAA 65 +P L L + + + GC ++ P + DA + A + AG N A + A Sbjct: 3 KPLLSTLALAITLAVSGCAMLEPQLPKADAAIPAAWPLPPNTAAAGQNVTADTSATKEQA 62 Query: 66 VADIGWRDVFTDPALQQVIAMSLANNRDLRVAVLNIEKARAQYGVERAALFPTINAATSE 125 ADIGWRD F DP L+++IA +L NNRDLRVAVLN+E+ARAQY ++ A FP ++ + + Sbjct: 63 AADIGWRDFFVDPKLEELIARALHNNRDLRVAVLNVERARAQYQIQNAERFPALDGSVAR 122 Query: 126 SASRTPADLSTTGSALTARSYSATLGFSAYELDLFGRVRSLKEQALQSFLSTAEARRSTQ 185 + R+ ++ G YSA L S +ELDLFGR+ +L + AL+ + + E +RS Q Sbjct: 123 N--RSGGNVVNPGD-----YYSAALSAS-FELDLFGRIHNLSQAALEQYFAQEEGQRSAQ 174 Query: 186 ISLIAEVATAWLTLASDQDRLRLAKDTLQSQSATYQLTQRSVELGSSSALTLRQVQTSVE 245 +SLIAE+A +LT A+D + R+A+ T +Q Y L + G+ S L L Q QT++E Sbjct: 175 LSLIAEIANTYLTFAADLESQRIAQATFDNQQIAYDLVVKRHRAGAVSGLDLSQAQTTIE 234 Query: 246 SARVDVESYTAQVDQDRNALVLLVGKDLPDTLLPHGLPDTALAAASPLATLPPGLPSELL 305 +AR DV Y V DRNAL LLVG + D+LLP G D ++ +PL P LPS++L Sbjct: 235 TARADVARYAGLVATDRNALTLLVGAPVEDSLLPQGF-DLKVSGIAPL---PAQLPSQVL 290 Query: 306 QRRADIVQAERDLKAANANIGAARAAFYPSISLTADAGTASARLAGLFKGGSGSWSFVPQ 365 RR D+ Q E L+ ANANIGAARAAF+PSISLT G+AS +L+GLF G+ WSFVPQ Sbjct: 291 LRRPDVRQTEHVLRGANANIGAARAAFFPSISLTGSVGSASNQLSGLFDSGTKFWSFVPQ 350 Query: 366 ISLPIFDGGANRANLDIATISRDISVAQYEKAIQTAFREVSDALAQRNTLGRQLAAQESL 425 ISLPIF GGA RANL +AT RDI++A+YEKAIQ+ FREV+DALA +TL ++ AQ++L Sbjct: 351 ISLPIFHGGALRANLGVATADRDIALARYEKAIQSGFREVADALALTSTLAQRRQAQQAL 410 Query: 426 VEASGAAYDLSQARFKSGVDSYLDVLDSQRSLYSAQSNLIGTRLSRWTNLVTFYKVLGGG 485 ++A+ AYDLS+AR++ G DS+L +LD+QR+ Y+AQ +L+ +L+ N VT YKVLGGG Sbjct: 411 LDAASRAYDLSKARYQYGRDSFLILLDAQRTFYTAQQSLVAAQLAEQGNRVTLYKVLGGG 470 Query: 486 WVERT 490 W E T Sbjct: 471 WEEGT 475 >gi|134095881|ref|YP_001100956.1| outer membrane transport protein involved in copper (silver) tolerance [Herminiimonas arsenicoxydans] Length = 474 Score = 398 bits (1022), Expect = e-112, Method: Compositional matrix adjust. Identities = 224/465 (48%), Positives = 306/465 (65%), Gaps = 6/465 (1%) Query: 24 LPLLLAVLLGGCTLMPDYHRPDAPVAARFAGDNSAPAAQSAAVADIGWRDVFTDPALQQV 83 L +L A +L C++ P Y RPDAPVAA + ++A Q A + GWR+ F D LQ + Sbjct: 7 LTVLAASVLSACSMAPKYTRPDAPVAADYPAASAAADKQQRA-HETGWRNFFPDQRLQAL 65 Query: 84 IAMSLANNRDLRVAVLNIEKARAQYGVERAALFPTINAATSESASRTPADLSTTGSALTA 143 I +LANNRDLRVA L IE+ARAQY ++ A L P +N + S +RTPA +S TG + Sbjct: 66 IGAALANNRDLRVAALRIEEARAQYNIQSADLLPNLNGTFTGSRARTPASISPTGIDSVS 125 Query: 144 RSYSATLGFSAYELDLFGRVRSLKEQALQSFLSTAEARRSTQISLIAEVATAWLTLASDQ 203 +Y L +++ELD FGRV SL + AL S+L+T EA+R+ ISL+AEVA A+L + Sbjct: 126 SAYQVGLSLASFELDFFGRVHSLNDAALASYLATEEAQRAAHISLVAEVAKAYLAERAFA 185 Query: 204 DRLRLAKDTLQSQSATYQLTQRSVELGSSSALTLRQVQTSVESARVDVESYTAQVDQDRN 263 ++L LA+ TL+S+ Y L ++ E+G+SSAL LRQ + ++SARV + Q Q N Sbjct: 186 EQLALAQSTLKSRGTAYDLAKQRFEVGASSALDLRQNEALLQSARVAQVTLARQRAQALN 245 Query: 264 ALVLLVGKDLPDTLLPHGLPDTALAAASPLATLPPGLPSELLQRRADIVQAERDLKAANA 323 AL LLVG+ P T P P L+A + + +P GLPS+LL +R DI AE+ L AANA Sbjct: 246 ALTLLVGQ--PLTGFPEAQP---LSAQNIVTDIPAGLPSDLLTQRPDIRSAEQSLLAANA 300 Query: 324 NIGAARAAFYPSISLTADAGTASARLAGLFKGGSGSWSFVPQISLPIFDGGANRANLDIA 383 NIGAARAAF+P ISLTA GTAS+ L+ LF G+ +W+F PQ+ LPIFD G N ANL ++ Sbjct: 301 NIGAARAAFFPRISLTAGIGTASSTLSNLFDSGTRAWTFAPQLVLPIFDAGRNSANLTLS 360 Query: 384 TISRDISVAQYEKAIQTAFREVSDALAQRNTLGRQLAAQESLVEASGAAYDLSQARFKSG 443 + ++I++A YEK+IQ+AFREVSDAL R+ L Q+ AQ + EA L+ RF++G Sbjct: 361 EVRKNIAIANYEKSIQSAFREVSDALVARDLLEEQIDAQRRVQEAQAERLKLADQRFQNG 420 Query: 444 VDSYLDVLDSQRSLYSAQSNLIGTRLSRWTNLVTFYKVLGGGWVE 488 + S LDVLD+QR L+SA+ +L+ RL R TN + Y+ LGGG E Sbjct: 421 IASSLDVLDAQRELFSAEQDLVQARLLRLTNAIDLYRSLGGGLTE 465 >gi|134095761|ref|YP_001100836.1| putative outer membrane transport protein involved in copper (silver) tolerance (cusC) [Herminiimonas arsenicoxydans] Length = 502 Score = 356 bits (914), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 204/428 (47%), Positives = 274/428 (64%), Gaps = 17/428 (3%) Query: 64 AAVADIGWRDVFTDPALQQVIAMSLANNRDLRVAVLNIEKARAQYGVERAALFPTINAAT 123 AA A +GWRD FTD LQ +IA +L NNRDLR AVL +E+ARA YG++RA FP I A Sbjct: 59 AAAAAMGWRDYFTDARLQDLIAQALENNRDLRAAVLRVEEARAAYGIQRAEQFPAIAAQA 118 Query: 124 SESASRTPADLSTTGSALTARSYSATLGFSAYELDLFGRVRSLKEQALQSFLSTAEARRS 183 + PADLS TG + Y +LG +++E+D +GRVRSL++ AL+++L++ EARR+ Sbjct: 119 GSERAHVPADLSLTGKPAMSSQYHVSLGLASWEIDFWGRVRSLRDAALENYLASDEARRA 178 Query: 184 TQISLIAEVATAWLTLASDQDRLRLAKDTLQSQSATYQLTQRSVELGSSSALTLRQVQTS 243 ISL+A+VA ++L L +R+ LA+ T+ S+ + ++ R VE+GS+S L L QVQT Sbjct: 179 VTISLVAQVANSYLALCELDERIALARLTIASREESLRIFTRRVEVGSTSRLNLTQVQTL 238 Query: 244 VESARVDVESYTAQVDQDR----NALVLLVGKDLPDTLLPHGLPDTA--LAAASPLATLP 297 + A ++ AQ++Q R NAL+LLVG L LP T+ L L L Sbjct: 239 LSQA----QALGAQLEQARALQANALILLVGVTLE-------LPATSSRLDERQMLLPLQ 287 Query: 298 PGLPSELLQRRADIVQAERDLKAANANIGAARAAFYPSISLTADAGTASARLAGLFKGGS 357 PGLPS+LL RR DIV AE LKAA+A IGAARAAF+P I+LT GTASA L GLF GS Sbjct: 288 PGLPSDLLIRRPDIVAAEHQLKAAHAQIGAARAAFFPRIALTGSFGTASAELDGLFAAGS 347 Query: 358 GSWSFVPQISLPIFDGGANRANLDIATISRDISVAQYEKAIQTAFREVSDALAQRNTLGR 417 +W+F P ISLP+FD G NL +A RD++VA YEK IQ AFR+V+DALA R L + Sbjct: 348 RAWTFAPSISLPLFDAGRRSNNLSLAEARRDLAVANYEKTIQAAFRDVADALAARQWLAQ 407 Query: 418 QLAAQESLVEASGAAYDLSQARFKSGVDSYLDVLDSQRSLYSAQSNLIGTRLSRWTNLVT 477 QL ++ + LSQ R+ +G +YLDVLD+QR L A+ L+ R + ++ V+ Sbjct: 408 QLLIAQAALTTQTERARLSQLRYDNGAAAYLDVLDAQRDLLVAEQQLVQIRRALLSSQVS 467 Query: 478 FYKVLGGG 485 Y LGGG Sbjct: 468 LYAALGGG 475 >gi|134094170|ref|YP_001099245.1| putative outer membrane protein [Herminiimonas arsenicoxydans] Length = 469 Score = 133 bits (335), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 147/470 (31%), Positives = 229/470 (48%), Gaps = 25/470 (5%) Query: 24 LPLLLAVLLG--GCTLMPDYHRPDAPVAARFAGDNSAPAAQSAAVADIGWRDVFTDPALQ 81 L L +AVL GC D +P+ + A +A APA + WR F L Sbjct: 12 LALAVAVLFAVSGCAHNIDASKPNVEIPATWA--EVAPAG--IELQRDWWRG-FGSNELS 66 Query: 82 QVIAMSLANNRDLRVAVLNIEKARAQYGVERAALFP--TINAATSESASRTPADLSTTGS 139 +I SLA + DL +A + +A A+LFP T++A T ++ P TGS Sbjct: 67 ALIDQSLAGSPDLIIAAERVTQAEITASSAGASLFPLLTVSAGT-DTGQVKPGP---TGS 122 Query: 140 ALTARSYSATLGFSA-YELDLFGRVRSLKEQALQSFLSTAEARRSTQISLIAEVATAWLT 198 ARS S + S YE+D++GRV + A S ++ + +++L VA A+ Sbjct: 123 GW-ARSESTGVALSVNYEVDVWGRVAATTRSANASLNASRYDLETVRLTLTTGVANAYFQ 181 Query: 199 LASDQDRLRLAKDTLQSQSATYQLTQRSVELGSSSALTLRQVQTSVESARVDVESYTAQV 258 + + +L++A++ L + + + G++SAL + + +++V + R + Q Sbjct: 182 TLALRMQLQVAQENLAIAEKLFSIVEARYRFGAASALDVSRQRSTVLAQRATILPLQVQE 241 Query: 259 DQDRNALVLLVGKDLPDTLLPHGLPDTALAAASPLATLPPGLPSELLQRRADIVQAERDL 318 Q +AL +L+G+ P L L LA + + PGLPS L+ RR D+ E L Sbjct: 242 RQTVSALAILLGRQ-PQALQVAALSLDTLA----IPEVSPGLPSTLITRRPDVASVEAQL 296 Query: 319 KAANANIGAARAAFYPSISLTADAGTASARLAGLFKGGSGSWSF--VPQISLPIFDGGAN 376 A +AN+ AARAA P+ISLT AG ASA L L G+ ++S I +FDG + Sbjct: 297 LAGSANVAAARAALLPTISLTGSAGNASAALLTL---GNPAYSIGIAASIVQTLFDGNSL 353 Query: 377 RANLDIATISRDISVAQYEKAIQTAFREVSDALAQRNTLGRQLAAQESLVEASGAAYDLS 436 R ++ +R Y + + TA +EV DAL Q AQ ++ + + A LS Sbjct: 354 RLRVETNESTRRQLAESYRRTVYTALKEVDDALGNATRNREQEQAQIAIKKEAERALALS 413 Query: 437 QARFKSGVDSYLDVLDSQRSLYSAQSNLIGTRLSRWTNLVTFYKVLGGGW 486 + R++ G D +LD+QR+L++A L RL R T +K LGGGW Sbjct: 414 ELRYREGADDLNSLLDAQRTLFAADDKLTQLRLLRLTGTTDVFKALGGGW 463 >gi|134093330|ref|YP_001098405.1| putative outer membrane efflux protein [Herminiimonas arsenicoxydans] Length = 480 Score = 126 bits (316), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 117/428 (27%), Positives = 194/428 (45%), Gaps = 15/428 (3%) Query: 71 WRDVFTDPALQQVIAMSLANNRDLRVAVLNIEKARAQYGVERAALFPTINAATS--ESAS 128 W D L ++I + + + AV IE++RA AAL P ++A+ + + Sbjct: 64 WWQQQNDSLLVELIQAAQTVSPTVATAVARIEQSRATRVSADAALLPKLDASVNVQRTNM 123 Query: 129 RTPADLSTTGSALTARSYSATLGFSAYELDLFGRVRSLKEQALQSFLSTAEARRSTQISL 188 + P L TT A S+ E DLFG R+ AL ++S+ Sbjct: 124 QQPLPLGTTTQAALQPSW---------EADLFGGNRATSRAALARLQGAQANWHDARVSV 174 Query: 189 IAEVATAWLTLASDQDRLRLAKDTLQSQSATYQLTQRSVELGSSSALTLRQVQTSVESAR 248 AEVA + +L + + + + S++ T +L+ S + G + T + S Sbjct: 175 AAEVANRYYSLRTCNKLVIVTRADADSRTETARLSDLSAKAGFQAPATAALARASAAEGN 234 Query: 249 VDVESYTAQVDQDRNALVLLVGKDLPDTLLPHGLPDTALAAASPLATLPPGLPSELLQRR 308 A D D ALV L D P + + DT S LP++ L +R Sbjct: 235 GRATQQRALCDLDIKALVALTAIDEP--AIRKKVADTPAPDTSATVLDISSLPAQTLAQR 292 Query: 309 ADIVQAERDLKAANANIGAARAAFYPSISLTADAGTASARLAGLFKGGSGSWSFVP-QIS 367 D+ AER++ AA+A +G A+A YP +SL+ G AS R G+ +WS P ++ Sbjct: 293 PDVFIAEREVAAASAEVGNAQAQRYPRLSLSGSIGVASFRSGGVTTN-LDTWSIGPVSLT 351 Query: 368 LPIFDGGANRANLDIATISRDISVAQYEKAIQTAFREVSDALAQRNTLGRQLAAQESLVE 427 LPIFDGGA AN+ A D +V Y +++ A REV +AL + + V+ Sbjct: 352 LPIFDGGARAANVTAAQAQYDAAVVSYRGSVRQAVREVEEALVNLQSTAARSDDARVAVD 411 Query: 428 ASGAAYDLSQARFKSGVDSYLDVLDSQRSLYSAQSNLIGTRLSRWTNLVTFYKVLGGGWV 487 A+++ +++R+++G+ S +++ D++R +A+ N + R + Y+ GGGW Sbjct: 412 GYRASFNGTESRYQNGLASLVELEDARRVRLAAELNAVSLERERMAAWIALYRAAGGGWS 471 Query: 488 ERTGTPVA 495 P A Sbjct: 472 NPDAAPAA 479 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.128 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 709,447 Number of extensions: 23565 Number of successful extensions: 149 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 123 Number of HSP's successfully gapped: 8 Length of query: 503 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 417 Effective length of database: 716,977 Effective search space: 298979409 Effective search space used: 298979409 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)