BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1163.p (396 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095879|ref|YP_001100954.1| acridine efflux pump protein [H... 340 8e-95 gi|134095558|ref|YP_001100633.1| acridine efflux pump protein [H... 314 6e-87 gi|134094274|ref|YP_001099349.1| hypothetical protein HEAR1042 [... 108 6e-25 gi|134094168|ref|YP_001099243.1| putative secretion protein [Her... 71 1e-13 >gi|134095879|ref|YP_001100954.1| acridine efflux pump protein [Herminiimonas arsenicoxydans] Length = 407 Score = 340 bits (871), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 184/369 (49%), Positives = 259/369 (70%), Gaps = 7/369 (1%) Query: 11 AAVAILSVLSACGKPPGGPPPAAGTPVLGVVTVRTQPVELHTELPGRTSPYQIADVRPQV 70 AA IL ++ CGK T V VVT+++ + + ELPGR +IA++R +V Sbjct: 12 AAFFILFAVAGCGKSDAPAAAPPPTEV-SVVTIKSSALGVTNELPGRLESTRIAEIRARV 70 Query: 71 GGIIKSRSFREGSDVKAGQMLYQIDPASYRAAYDSSVAALAKAEASVKTARLKAQRYKEL 130 G++ R+FREGSDVKAG L+ IDPA ++A Y+S+ AA+A+AEA++ A LK +RYK L Sbjct: 71 PGVVLKRTFREGSDVKAGATLFLIDPAQFKATYNSANAAVARAEATLLQAELKEKRYKPL 130 Query: 131 VAIKAVSQQDYDDAVASLGEAEADVGSARANVQTSRINLDYARVDAPISGRISKSSVTPG 190 VA A+S+Q+YDD A+L +AEAD+ +++A +T+R++LDYA V +PISGRI ++ VT G Sbjct: 131 VATNAISKQEYDDVTATLKQAEADLAASKAARETARLSLDYATVTSPISGRIGRALVTEG 190 Query: 191 ALVTASQTTALTTIQQLDPIYVDVTQSSTNWLDLKEALAKGQLQKSGNG-AKVRLILENG 249 ALV ++ T L T+QQ+DPIYV++TQSST L L+ ALA G+L+ +G G KV L+ E+G Sbjct: 191 ALVGQNEATPLATVQQIDPIYVNMTQSSTEILQLQRALADGKLKSAGKGQVKVTLVTEDG 250 Query: 250 RTYAEEGRLQFSDVTVNQDTGAITLRAVFPNPKADLLPGMYVRAVLEEGVRQQGLLVPQQ 309 + YA+ G+L FSD+TV+ +GAITLRA FPNP + LLPGMYVRA +E+ + + + VPQQ Sbjct: 251 QEYAQPGKLLFSDLTVDASSGAITLRAEFPNPDSQLLPGMYVRARVEQAINENAITVPQQ 310 Query: 310 AVSR--DGAGKPQAFVVNAQGVVEQRALVTDRAIGDQWLVSSGLKEGDQLVVDGQQQATP 367 A+SR DGA VV+A+ V R + T A GD W++S GLK+GDQ++V+G Q+ P Sbjct: 311 AISRTPDGAA---VMVVSAENTVVSRPVTTGAASGDSWVISDGLKDGDQVIVEGLQKIKP 367 Query: 368 GAKVKVVPW 376 GA VK V W Sbjct: 368 GATVKPVQW 376 >gi|134095558|ref|YP_001100633.1| acridine efflux pump protein [Herminiimonas arsenicoxydans] Length = 403 Score = 314 bits (804), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 173/332 (52%), Positives = 238/332 (71%), Gaps = 1/332 (0%) Query: 40 VVTVRTQPVELHTELPGRTSPYQIADVRPQVGGIIKSRSFREGSDVKAGQMLYQIDPASY 99 VVT++ Q V L ELPGRT+ + +A+VRPQV GIIK R F EG+ VKAGQ LYQ+D A Y Sbjct: 42 VVTLKAQEVSLTRELPGRTNAFLVAEVRPQVNGIIKKRLFTEGAQVKAGQPLYQLDDAIY 101 Query: 100 RAAYDSSVAALAKAEASVKTARLKAQRYKELVAIKAVSQQDYDDAVASLGEAEADVGSAR 159 +A Y S+ AALA+A+A++K+A L A R ELV I AVS+QD ++A A+L +++ADV +A+ Sbjct: 102 QANYASAKAALARAQATLKSAELNATRTAELVKIDAVSRQDNENAEAALSQSKADVAAAQ 161 Query: 160 ANVQTSRINLDYARVDAPISGRISKSSVTPGALVTASQTTALTTIQQLDPIYVDVTQSST 219 A +Q++ + L YA++ +PI+GRI KSSVT GALVTA+Q AL T+QQL+P+Y+D+TQSS+ Sbjct: 162 AALQSNSVTLGYAQITSPITGRIGKSSVTQGALVTANQAAALATVQQLNPVYIDLTQSSS 221 Query: 220 NWLDLKEALAKGQLQKSGNGAKVRLILENGRTYAEEGRLQFSDVTVNQDTGAITLRAVFP 279 L L++ LA G+L +SGN V+++LE+G Y +G+L F+DVTV+ TG+ LR P Sbjct: 222 ELLQLRKELAAGRLTQSGN-LPVQIVLEDGSRYQHDGKLAFADVTVDPGTGSFALRVTVP 280 Query: 280 NPKADLLPGMYVRAVLEEGVRQQGLLVPQQAVSRDGAGKPQAFVVNAQGVVEQRALVTDR 339 NP L+PGMYVRA++ GVRQ +LVPQQ ++RD G A VV+ G V R + R Sbjct: 281 NPDNILMPGMYVRALIGNGVRQNAILVPQQGIARDPKGNTSAMVVDKDGKVALRPVSVSR 340 Query: 340 AIGDQWLVSSGLKEGDQLVVDGQQQATPGAKV 371 IGD+WLV GL GD+++V G Q+ PG V Sbjct: 341 TIGDKWLVEDGLAAGDRVIVAGLQKIKPGIPV 372 >gi|134094274|ref|YP_001099349.1| hypothetical protein HEAR1042 [Herminiimonas arsenicoxydans] Length = 382 Score = 108 bits (269), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 100/319 (31%), Positives = 146/319 (45%), Gaps = 18/319 (5%) Query: 56 GRTSPYQIADVRPQVGGIIKSRSFREGSDVKAGQMLYQIDPASYRAAYDSSVAALAKAEA 115 G + DVRP+V I+++ REG VKAGQ+L+ +D S ++ + A LA ++ Sbjct: 59 GYVTAINTVDVRPKVQNIVRTIHVREGQFVKAGQLLFTLDERSDQSNVAKAQAELAAGQS 118 Query: 116 SVKTARLKAQRYKELVAIKAVSQQDYDDAVASLGEAEADVGSARANVQTSRINLDYARVD 175 + A L +R ++L++ VSQ D A + + RA ++S I L R+ Sbjct: 119 DLADAELALKRNEDLLSRNFVSQAVVDTARNKVAALRNTSKANRAIAESSNITLSDNRIA 178 Query: 176 APISGRISKSSVTPGALVTASQTTALTTIQQLDPIYVDVTQSSTNWLDLKEALAKGQLQK 235 A ISGRI SV PG+L S + TI QLDPI V T ++ +G Sbjct: 179 ASISGRIGIISVHPGSLAQPS-GDPMVTISQLDPIAVSFTLPERELANITATYPQGNAPV 237 Query: 236 SGNGAKVRLILENGRTYAEEGRLQFSDVTVNQDTGAITLRAVFPNPKADLLPGMYVRAVL 295 + RL + T G+L F D + +G I ++A F N L PG +V L Sbjct: 238 TA-----RLPGQPEMT----GKLIFIDNAADTQSGTIRMKAQFDNAAQKLWPGSFVNVSL 288 Query: 296 EEGVRQQGLLVPQQAVSRDGAGKPQAFVVNAQ---GVVEQRALVTDRAIGDQWLVSSGLK 352 +LVP QAV G F+ Q V EQ+ V AI + GL Sbjct: 289 VSRNVSHAVLVPAQAVV---TGPIDKFIYVVQPDATVKEQKVDVV--AIEEGQAAVIGLD 343 Query: 353 EGDQLVVDGQQQATPGAKV 371 G ++VV+G Q PG+K+ Sbjct: 344 AGARVVVEGTQNLRPGSKI 362 >gi|134094168|ref|YP_001099243.1| putative secretion protein [Herminiimonas arsenicoxydans] Length = 481 Score = 70.9 bits (172), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 71/274 (25%), Positives = 121/274 (44%), Gaps = 29/274 (10%) Query: 56 GRTSPYQIADVRPQVGGIIKSRSFREGSDVKAGQMLYQIDPASYRAAYDSSVAALAKAEA 115 G P + DV QV G +K GS VK G +L +IDP +RA D+ A L +A Sbjct: 70 GTVQPLEYVDVGAQVSGQLKKLHIEVGSVVKEGDLLAEIDPTVFRATVDARRAGLRNQQA 129 Query: 116 SVKT-------ARLKAQRYKELVAIKAVSQQDYDDAVASLGEAEADVGSARANVQTSR-- 166 ++K A L+ R K L+A A + + A A+L A+A + + +A ++ ++ Sbjct: 130 TMKERESALALASLQYTRQKNLMAADATTAETLQIAEATLRAAKAQIDALQAQIEQTQST 189 Query: 167 -----INLDYARVDAPISGRISKSSVTPGALVTASQTTALTTIQQLDPIYVDVTQSSTNW 221 NL+YA++ AP++G + + G + A+Q P + + ST Sbjct: 190 LRADEANLNYAKIYAPMTGTVVSLTARQGQTLNANQNA---------PTILRIADLSTMT 240 Query: 222 LDLKEALAK-GQLQKSGNGAKVRLILENGRTYAEEGRLQFSDVTVNQDTGAITLRAVF-- 278 + + + A+ G+L K+ L + R Y +++ + N + A+F Sbjct: 241 VQTQVSEAEIGKLSKNMEVYFTTLGSQGRRWYGALRKIEPTPTVTNN---VVLYNALFDV 297 Query: 279 PNPKADLLPGMYVRAVLEEGVRQQGLLVPQQAVS 312 PN L+P M + + LLVP AV+ Sbjct: 298 PNNNQALMPNMTTQVFFIAATAKDVLLVPTSAVT 331 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.313 0.128 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 617,209 Number of extensions: 23882 Number of successful extensions: 102 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 90 Number of HSP's successfully gapped: 10 Length of query: 396 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 312 Effective length of database: 723,567 Effective search space: 225752904 Effective search space used: 225752904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 130 (54.7 bits)