BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1157.p
         (258 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093321|ref|YP_001098396.1| aldolase II superfamily protein...   161   3e-41

>gi|134093321|ref|YP_001098396.1| aldolase II superfamily protein
           [Herminiimonas arsenicoxydans]
          Length = 254

 Score =  161 bits (408), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 83/236 (35%), Positives = 134/236 (56%), Gaps = 6/236 (2%)

Query: 17  SDQEWALRIQLAHCYRLVDYLGWTEMIFNHISVRVPGPEHHYLVNPFALNYNEVTPANLL 76
           SD EW +R+ LA CY L     W ++I+ HIS  VPG E  +L+NPF L ++E+T +NL+
Sbjct: 14  SDAEWQVRLDLAACYHLCALKNWDDLIYTHISATVPGEEGRFLINPFGLRFDEITASNLV 73

Query: 77  KVGLDGQLAEASDYKANPAGFALHSAIHGARDDLRCVIHTHTTPISAVTMKKSGFEHNDF 136
           K+ L G +      + N  GFA+H A+H AR D  CV+H H     AV M++ G      
Sbjct: 74  KIDLQGNIIGDQTARVNVTGFAIHGAVHSARKDAMCVMHLHNENGVAVGMQQGGLLPLSQ 133

Query: 137 YGAQLFGRIGYHEFEGITLFAEEKQRMLQSLGDKHILVLRNHGVAVCESDIERAFFLLWT 196
           +  + + ++GYH++EG+ L   E+ R+++ LGD   ++LRNHG  +    I  A+ L+ T
Sbjct: 134 HAMRFYQQMGYHDYEGLALSPLEQTRLIERLGDYPAMLLRNHGTLISGRTIAEAYVLMDT 193

Query: 197 VQRAAEIQVAGRAMGGEDQQLADGVRQKCADLTQQLIRNDGF--AVIFFEAIVRKM 250
           + +A   Q+  +A GG    L     + CA   ++L+  DG    ++ + A++RK+
Sbjct: 194 LDKACSFQLKAQAGGGP---LNIPPPEVCAKTYRELL-GDGAPEGLLEWPALLRKL 245


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.138    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 507,072
Number of extensions: 20322
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 178
Effective length of database: 736,747
Effective search space: 131140966
Effective search space used: 131140966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)