BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1156.p
         (349 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093624|ref|YP_001098699.1| 2-dehydropantoate 2-reductase [...   208   4e-55

>gi|134093624|ref|YP_001098699.1| 2-dehydropantoate 2-reductase
           [Herminiimonas arsenicoxydans]
          Length = 336

 Score =  208 bits (529), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 109/330 (33%), Positives = 187/330 (56%), Gaps = 5/330 (1%)

Query: 12  LRICIAGAGAIGGTLAVRLSAAGHQVSVLARGQTLQAIREHG--LTLHD--LHGRTHARP 67
           ++I + GAGAIGG + V+L+ AG  V+ + RG  L+AIR++G  L +HD   H  ++ + 
Sbjct: 1   MKIAVIGAGAIGGYVGVKLALAGEDVTFIVRGANLEAIRKNGAKLIMHDGSEHVASNVKA 60

Query: 68  TASELPEFGEQDVIFLCAKSQDMSALLSQIAPLVGAQTVVIPTNNGVPWWYFHREGGRFD 127
           T +   E G QD+I L  K+  + A+   +  L+G +TV++   NG+P+WYFH+ GG+  
Sbjct: 61  T-NNYDEAGHQDIIVLAMKAHQLEAIADDLPKLIGPETVIVTMQNGIPFWYFHKHGGKLA 119

Query: 128 GQTVKAVDPDGALSRAVPLAQLIGSVLFITAEVERPGVIRSVNPHLMVLGEPSGEMSERL 187
           G  V++VDP G ++  +P  +++G V++  +E+  PGVI+ +      +GE  G +SER 
Sbjct: 120 GTRVESVDPTGKITAKIPADRVLGCVVYPASELIAPGVIKHIEGDRFPIGELDGSISERA 179

Query: 188 LRVRAAVEAAGIEARATDRIRDKLWTKIIANISTNPLSVITRGTLEQLYGQPELREVVSQ 247
            RV      AG ++   + IR ++W K+  N++ NP+S ++  TL+ +   P  RE+ + 
Sbjct: 180 TRVSECFTNAGFKSPVLENIRSEMWLKLWGNLTFNPISALSHSTLQDICQFPLSRELAAA 239

Query: 248 IMRETLLVASSYGARVDIDPLTFLQLGEAMGAFRTSMLQDLERGRPLELAAIGDAVLEMA 307
           +M E   VA+  G    +     +   E +G  +TSMLQD+E GR  E+ A+  +V+E+ 
Sbjct: 240 MMTEAQTVANKLGIEFRVTLDKRIAGAEKVGKHKTSMLQDVEAGRDPEIDALVGSVVELG 299

Query: 308 ERFAIPMPITRAVVSLARFRGETARQQTDQ 337
                P P    V +L +   +T  +++ Q
Sbjct: 300 RLTETPTPHIDTVYALVKLLAKTMEEESGQ 329


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 556,581
Number of extensions: 20968
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 266
Effective length of database: 726,862
Effective search space: 193345292
Effective search space used: 193345292
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)