BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1155.p (249 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095636|ref|YP_001100711.1| high-affinity branched-chain am... 223 1e-59 gi|134095847|ref|YP_001100922.1| high-affinity branched-chain am... 208 2e-55 gi|134096407|ref|YP_001101482.1| high-affinity branched-chain am... 197 3e-52 gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding pro... 134 5e-33 gi|134095848|ref|YP_001100923.1| high-affinity branched-chain am... 118 3e-28 >gi|134095636|ref|YP_001100711.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 241 Score = 223 bits (567), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 118/244 (48%), Positives = 167/244 (68%), Gaps = 11/244 (4%) Query: 1 MGNKVLEVRELSAAYGPVQVLSGINLSVEQGRIVTVIGPNGAGKTTLLSAIMGVLPSRGA 60 M VL++ L AYG +Q + GI+L V QG ++T+IG NGAGKTT L AI G LP Sbjct: 1 MTTTVLKIAGLKVAYGGIQAVKGIDLDVRQGELITLIGANGAGKTTTLKAITGTLPE--- 57 Query: 61 MAFDGVIRHSPEV------EEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYRSGQRD 114 DG I ++ + E+V + +VPE R +F M+I++NL++GAF R + ++ Sbjct: 58 CRVDGHIEYAGQAIKGLGSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTR--NDKQG 115 Query: 115 HAATLEEVYTLFPRLRERRSQHAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLI 174 A +E+ + +FPRL+ER +Q AGTLSGGE+QMLA+ RALM+ P+LL+LDEPS+GL+P++ Sbjct: 116 IADDMEKWFAVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPQLLLLDEPSMGLSPIM 175 Query: 175 VREIFRIIAELRRRGVSILLVEQNARAALQVADYGYVLENGEIRMHGPASQLAHDRRVIE 234 V +IF +I + +G++ILLVEQNAR ALQ A YV+E+G I M G A Q+ +D +V E Sbjct: 176 VEKIFEVIRSVAAQGITILLVEQNARLALQAAHRAYVMESGLITMQGDAQQMLNDPKVRE 235 Query: 235 AYLG 238 AYLG Sbjct: 236 AYLG 239 >gi|134095847|ref|YP_001100922.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 243 Score = 208 bits (530), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 113/240 (47%), Positives = 158/240 (65%), Gaps = 2/240 (0%) Query: 1 MGNKVLEVRELSAAYGPVQVLSGINLSVEQGRIVTVIGPNGAGKTTLLSAIMGVL-PSRG 59 M +L+V L YG ++ GI++ V +G V +IG NGAGK++ L AI GV+ P+ G Sbjct: 1 MSAPLLKVENLCVNYGHIEAARGISIEVGEGEFVGMIGSNGAGKSSALKAIAGVVKPASG 60 Query: 60 AMAFDGVIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAF-QRYRSGQRDHAAT 118 ++ G EMV G+ LVPE R +FA+ ++EDNL+LG F Q RSG Sbjct: 61 SITLGGKPVQGLASHEMVHQGVALVPEGRFVFADQSVEDNLILGGFVQAQRSGVAALRDD 120 Query: 119 LEEVYTLFPRLRERRSQHAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVREI 178 ++ ++ LFPRL+ERR+Q AG+LSGGE+QML + R LM+ PRLL++DE SLGLAP I+ + Sbjct: 121 IDRMFQLFPRLKERRTQQAGSLSGGEQQMLVIARGLMSHPRLLLIDEVSLGLAPKILDFL 180 Query: 179 FRIIAELRRRGVSILLVEQNARAALQVADYGYVLENGEIRMHGPASQLAHDRRVIEAYLG 238 F ++ +L R+G+SILLVEQ A AL V YV+ENG +++ G +S L D V+EAYLG Sbjct: 181 FPVLVDLNRQGLSILLVEQIATRALAVTSRAYVMENGNVKISGRSSDLVKDAAVMEAYLG 240 >gi|134096407|ref|YP_001101482.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 235 Score = 197 bits (502), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 102/235 (43%), Positives = 155/235 (65%), Gaps = 5/235 (2%) Query: 6 LEVRELSAAYGPVQVLSGINLSVEQGRIVTVIGPNGAGKTTLLSAIMGVLPSR-GAMAFD 64 L V+ L+ Y V VL +++ V G+I ++G NGAGK+TL+ +I+G+ P R G + ++ Sbjct: 4 LSVKGLTTGYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQGEILWN 63 Query: 65 GVIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYRSGQ-RDHAATLEEVY 123 G + ++A+G++ +PE R++F M++ +NL LGAF S R+ L VY Sbjct: 64 GRNLAGEKTHAIIASGISCIPEGRKVFPRMSVAENLALGAFLVTNSAVVRER---LARVY 120 Query: 124 TLFPRLRERRSQHAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVREIFRIIA 183 +FPRL+ER +Q AGT+SGGE+ M+++GR LMA+P+LL++DEPSLGL+PL V+E F +I Sbjct: 121 EIFPRLKERAAQLAGTMSGGEQAMVSIGRGLMAEPQLLVIDEPSLGLSPLYVKENFNVIR 180 Query: 184 ELRRRGVSILLVEQNARAALQVADYGYVLENGEIRMHGPASQLAHDRRVIEAYLG 238 + G+++LLVEQNAR L ++ YGYVL G + G A +LA + V AY G Sbjct: 181 RINALGITVLLVEQNARQTLAISHYGYVLSQGRVMAEGTAEELASNDDVRAAYFG 235 >gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 246 Score = 134 bits (337), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 80/242 (33%), Positives = 131/242 (54%), Gaps = 5/242 (2%) Query: 1 MGNKVLEVRELSAAYGPVQVLSGINLSVEQGRIVTVIGPNGAGKTTLLSAIMGVLPSR-G 59 M +K++ V L +YG QV+ + L VE G ++ ++GPNGAGKTT I+G++PS G Sbjct: 1 MSSKLI-VSGLQKSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAG 59 Query: 60 AMAFDGVIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNL-MLGAFQRYRSGQRDHAAT 118 + DGV + + G++ +P++ +F ++++EDN+ + QR Sbjct: 60 RIELDGVDISRQPIHKRAQLGLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKALSKEQI 119 Query: 119 LEEVYTLFPRLR--ERRSQHAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVR 176 + + TL L+ + R A +LSGGER+ + + RAL PR ++LDEP G+ P+ V Sbjct: 120 EQRLDTLLADLQIEKLRENQALSLSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAVI 179 Query: 177 EIFRIIAELRRRGVSILLVEQNARAALQVADYGYVLENGEIRMHGPASQLAHDRRVIEAY 236 EI RI+ L+ RG+ +L+ + N R L + D Y++ G + G + D V Y Sbjct: 180 EIQRIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGAVLASGRPDDIIADESVRRVY 239 Query: 237 LG 238 LG Sbjct: 240 LG 241 >gi|134095848|ref|YP_001100923.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 608 Score = 118 bits (296), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/265 (29%), Positives = 138/265 (52%), Gaps = 23/265 (8%) Query: 2 GNKVLEVRELSAAYGPVQVLSGINLSVEQGRIVTVIGPNGAGKTTLLSAIMGVL-PSRGA 60 G L+ ++++ A+G + ++ ++ G + +VIGPNGAGK+T ++ + G P+ G+ Sbjct: 344 GTTCLQTKDMTMAFGGLIANDKVSEVLKAGTVHSVIGPNGAGKSTFINCVSGFYRPTSGS 403 Query: 61 MAFDGVIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYRSG--------- 111 + F G I + + ++ G+ + ELF +M +N+++GA RYRSG Sbjct: 404 IEFMGQIATAKQSHQLARMGLARTFQNTELFGDMTCLENVLVGADSRYRSGLFATLLRLP 463 Query: 112 -----QRDHAATLEEVYTL--FPRLRERRSQHAGTLSGGERQMLAVGRALMAKPRLLMLD 164 +R +AA E L + L + + A L G ++ L + RAL P+LL+LD Sbjct: 464 SYFHDERRYAA---EARCLLEYVGLDDYAEEKARNLPFGHQRRLEIARALAMSPKLLLLD 520 Query: 165 EPSLGLAPLIVREIFRIIAELRRRGVSILLVEQNARAALQVADYGYVLENGEIRMHGPAS 224 EP+ GL + ++ ++I L +++LLVE + + V+D+ VL+ G++ G + Sbjct: 521 EPAAGLTHGEIEDLMKLIRNLASHQITVLLVEHHVDMIMAVSDHVTVLDYGKVIASGTVA 580 Query: 225 QLAHDRRVIEAYLG---LSGKHQDK 246 ++ + VIEAY G G DK Sbjct: 581 EVRSNPAVIEAYFGTGETKGNTDDK 605 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.137 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 473,236 Number of extensions: 19771 Number of successful extensions: 231 Number of sequences better than 1.0e-08: 43 Number of HSP's gapped: 182 Number of HSP's successfully gapped: 46 Length of query: 249 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 170 Effective length of database: 740,042 Effective search space: 125807140 Effective search space used: 125807140 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)