BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1154.p (630 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095848|ref|YP_001100923.1| high-affinity branched-chain am... 319 3e-88 gi|134095637|ref|YP_001100712.1| high-affinity branched-chain am... 224 1e-59 gi|134096408|ref|YP_001101483.1| high-affinity branched-chain am... 161 9e-41 gi|134093663|ref|YP_001098738.1| putative branched-chain amino a... 148 7e-37 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 128 9e-31 >gi|134095848|ref|YP_001100923.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 608 Score = 319 bits (817), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 213/573 (37%), Positives = 321/573 (56%), Gaps = 28/573 (4%) Query: 45 LASLVVLGLVLLTGVAGLTSFGQAAFVGLGAYLSAALSAKVLPLPDALLWMQSPWVALVV 104 + +LV LGL +LTG+ GL S GQA +GAY SA LS K + +V Sbjct: 43 IYALVALGLNILTGLTGLVSLGQAGLFAIGAYTSAVLSTK---------FGFGLGTCIVA 93 Query: 105 ALLLTALLALAVGSVTLKLSGHYLPLGTIAWGISLYFIFGTLESM-GGQTGMSGIPSITL 163 A++L+A + + T+++ G YL + TIA+GI + + S+ GG G+S IP+ T+ Sbjct: 94 AMILSAAFGVLLSYPTVRVRGVYLTVITIAFGIIVENVAIEWSSLTGGPNGISSIPTPTM 153 Query: 164 FGVALHSDRAMFGLIWVMVLLGVAAVHNLLDSRQGRAIRALKGGIVMAEAMGIPTARMRI 223 FG+ L D F ++ ++ LL +NL+ SR GRA+RA+ A +GI MR+ Sbjct: 154 FGLPLE-DTKFFYVLAILFLLAFLLHYNLIKSRFGRAMRAVSQSETAARTVGINPIVMRM 212 Query: 224 VVFVIAAVLAALSGWLYVHMQRFVNPSPFGLGFGIDYLFMAVLGGASQVWGALLGSALIV 283 + FVIAA A +G Y + ++VNP F + +L M +LGG+ V G LG+ ++ Sbjct: 213 MSFVIAAAFAGAAGATYAFLNQYVNPDTFRFDDSVRFLLMVILGGSGTVIGPALGATILT 272 Query: 284 VMKEWLQGILPVLLGRSGNFETIVFGLLIVVLLQRSRDGIWPYLARLVPVHTRRLQLDTQ 343 + E+LQ G ++ +G+L+ +++ GI + + ++ + L ++ Sbjct: 273 FIPEYLQSF--------GEWQRFAYGVLLALVMFGMPMGIVGTVNLWISRFSKSVNLRSR 324 Query: 344 AEPLPR-------RAMPAPHEVVLDVRAVTRKFGGLVANNNMSLKVMAGEVLALIGPNGA 396 P ++ A L + +T FGGL+AN+ +S + AG V ++IGPNGA Sbjct: 325 PWPCVNADTEALLKSDTAAGTTCLQTKDMTMAFGGLIANDKVSEVLKAGTVHSVIGPNGA 384 Query: 397 GKSTLFNQISGVDTPTSGSVQFRGHEVTGRGARHIAGLGMSRSFQHVRLMPRMTVLENVA 456 GKST N +SG PTSGS++F G T + + +A +G++R+FQ+ L MT LENV Sbjct: 385 GKSTFINCVSGFYRPTSGSIEFMGQIATAKQSHQLARMGLARTFQNTELFGDMTCLENVL 444 Query: 457 IGAYLRGQRGVLASMLRLDR--KEEARILAEAARQIERVGLGAQMYELAGALSLGQQRIL 514 +GA R + G+ A++LRL +E R AEA +E VGL E A L G QR L Sbjct: 445 VGADSRYRSGLFATLLRLPSYFHDERRYAAEARCLLEYVGLDDYAEEKARNLPFGHQRRL 504 Query: 515 EIARALAADPCLLLLDEPAAGLRLGEKQALAELLRKLRGEGMAILLVEHDMDFVMELVDR 574 EIARALA P LLLLDEPAAGL GE + L +L+R L + +LLVEH +D +M + D Sbjct: 505 EIARALAMSPKLLLLDEPAAGLTHGEIEDLMKLIRNLASHQITVLLVEHHVDMIMAVSDH 564 Query: 575 IVVMDFGQKIAEGLPAEIQNNRAVLEAYLGVAD 607 + V+D+G+ IA G AE+++N AV+EAY G + Sbjct: 565 VTVLDYGKVIASGTVAEVRSNPAVIEAYFGTGE 597 >gi|134095637|ref|YP_001100712.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 260 Score = 224 bits (570), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 117/250 (46%), Positives = 167/250 (66%), Gaps = 2/250 (0%) Query: 357 EVVLDVRAVTRKFGGLVANNNMSLKVMAGEVLALIGPNGAGKSTLFNQISGVDTPTSGSV 416 +++L++ V+++FGGL A ++++K+M G++ LIGPNGAGK+T FN I+G+ SGS Sbjct: 8 QIILNIANVSKRFGGLQALTDVNVKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADSGSF 67 Query: 417 QFRGHEVTGRGARHIAGLGMSRSFQHVRLMPRMTVLENVAIGAYLRGQRGVLASML--RL 474 + G + +A G++R+FQ++RL MT LENV +G ++R +G+ ++ + Sbjct: 68 ELAGKAYSPSAPHLVAKAGIARTFQNIRLFGEMTALENVMVGRHVRTHQGLFGAVFHHKA 127 Query: 475 DRKEEARILAEAARQIERVGLGAQMYELAGALSLGQQRILEIARALAADPCLLLLDEPAA 534 R+EEA I A A ++ VG+ A LS G QR LEIARALA DP LL LDEPAA Sbjct: 128 ARQEEAAIRARAMELLDFVGIAQFAGRTARHLSYGDQRRLEIARALATDPQLLALDEPAA 187 Query: 535 GLRLGEKQALAELLRKLRGEGMAILLVEHDMDFVMELVDRIVVMDFGQKIAEGLPAEIQN 594 G+ EK L ELL K++ EG ILL+EHD+ VM L DRI V+D+G+ IAEG+PA++Q Sbjct: 188 GMNATEKLGLRELLVKIKAEGKTILLIEHDVKLVMGLCDRITVLDYGKPIAEGVPADVQK 247 Query: 595 NRAVLEAYLG 604 N AV+EAYLG Sbjct: 248 NPAVIEAYLG 257 >gi|134096408|ref|YP_001101483.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 276 Score = 161 bits (407), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 99/254 (38%), Positives = 158/254 (62%), Gaps = 9/254 (3%) Query: 363 RAVTRKFGGLVANNNMSLKVMAGEVLALIGPNGAGKSTLFNQISGVDTPTSGSVQFRGHE 422 R +T +FGGL A + ++L ++ GEVL L+GPNG+GK+T FN ++G+ +SGS+ ++G E Sbjct: 26 RDLTMRFGGLTALDQLNLHIVEGEVLGLLGPNGSGKTTFFNVLTGLYKASSGSIIYQGRE 85 Query: 423 VTGRGARHIAGLGMSRSFQHVRLMPRMTVLENVAIGAYLRGQRGVLASMLRLD--RKEEA 480 V G+ + I G++R+FQ RL +TV +N+ IG Y Q G+ ++ R R E Sbjct: 86 VIGQTPQEIYRSGVARTFQRSRLSLPLTVFDNIVIGDYQHMQHGLFFNLFRRKAFRAEYD 145 Query: 481 RILA--EAARQIERVGLGAQMYELAGALSLGQQRILEIARALAADPCLLLLDEPAAGLRL 538 +A EA I L A+M+E S+ +R +E+ RAL ++P LLLLDEP+AG+ Sbjct: 146 AYVAKVEALLHIFSPPLVARMFEPVETFSMIDRRRIEVCRALLSEPRLLLLDEPSAGMTH 205 Query: 539 GEKQALAELLRKLRGE--GMAILLVEHDMDFVMELVDRIVVMDFGQKIAEGLPAEIQNNR 596 E +AL + + ++R + + ++L+EH+M+ + + DR +V ++G+KIAEG AEI + Sbjct: 206 DETEALMDDILQVRNKLSNLTVVLIEHEMNVIKRITDRCIVFNYGKKIAEGTYAEITADP 265 Query: 597 AVLEAYLGVADEDQ 610 V AYLG ED+ Sbjct: 266 NVQTAYLG---EDE 276 >gi|134093663|ref|YP_001098738.1| putative branched-chain amino acid ABC transporter, ATP-binding protein [Herminiimonas arsenicoxydans] Length = 255 Score = 148 bits (374), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 87/255 (34%), Positives = 145/255 (56%), Gaps = 9/255 (3%) Query: 354 APHEVVLDVRAVTRKFGGLVANNNMSLKVMAGEVLALIGPNGAGKSTLFNQISGVDTPTS 413 + ++V+L + ++R +G +A +N+ L V GE ++++GPNGAGK+TL N ++G+ PT+ Sbjct: 2 STNDVLLQAQQISRHYGDFIALHNVDLSVSRGEFVSVVGPNGAGKTTLVNVLTGLHQPTT 61 Query: 414 GSVQFRGHEVTGRGARHIAGLGMSRSFQHVRLMPRMTVLENVAIGA--YLRGQRGVLASM 471 G+V F G + G GA +A G++R+FQ + P +TV E +A+ A YL + S+ Sbjct: 62 GNVHFNGSNIAGVGAVDLATRGLARAFQLTSIFPELTVRETIAVSACSYLNMRWNGFGSL 121 Query: 472 LRLDRKEEARILAEAARQIERVGLGAQMYELAGALSLGQQRILEIARALAADPCLLLLDE 531 + + + R + GL + +L G++++L++A A A P ++LLDE Sbjct: 122 FGSRKVNDIVV-----RTADAFGLAPWLDTKGSSLPHGRRKLLDVASAFALHPKVMLLDE 176 Query: 532 PAAGLRLGEKQALAE-LLRKLRGEGM-AILLVEHDMDFVMELVDRIVVMDFGQKIAEGLP 589 P AG+ +K + E LLR + G+ AI+LVEHDMD V RI+ M G+KIA+ Sbjct: 177 PTAGVSTADKHGVMETLLRAAKHMGIEAIMLVEHDMDLVSRYSTRIIAMQAGKKIADLPR 236 Query: 590 AEIQNNRAVLEAYLG 604 E N ++ +G Sbjct: 237 DEFFANEEIISIVVG 251 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 128 bits (321), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 84/239 (35%), Positives = 128/239 (53%), Gaps = 13/239 (5%) Query: 360 LDVRAVTRKFGGLVANNNMSLKVMAGEVLALIGPNGAGKSTLFNQISGVDTPTSGSVQFR 419 ++V+ + +KFG VA N++SL+ AGE+ AL+GP+G GK+TL I+G++ P G V Sbjct: 3 IEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 420 GHEVTGRGARHIAGLGMSRSFQHVRLMPRMTVLENVAIGAYLRGQRGVLASMLRLDRKEE 479 G + + ARH+ + FQH L MTV EN+A G +R R E Sbjct: 63 GEDAS---ARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPA---------ATRPSE 110 Query: 480 ARILAEAARQIERVGLGAQMYELAGALSLGQQRILEIARALAADPCLLLLDEPAAGLRLG 539 + I + + +E V L LS GQ++ + +ARALA +P +LLLDEP L Sbjct: 111 SVIKEKVTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAK 170 Query: 540 EKQALAELLRKLRGE-GMAILLVEHDMDFVMELVDRIVVMDFGQKIAEGLPAEIQNNRA 597 ++ L LR+L E + + V HD + +E+ D+IV+M+ G G P ++ NN A Sbjct: 171 VRKELRRWLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPA 229 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.325 0.139 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,031,525 Number of extensions: 41949 Number of successful extensions: 391 Number of sequences better than 1.0e-08: 48 Number of HSP's gapped: 319 Number of HSP's successfully gapped: 52 Length of query: 630 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 543 Effective length of database: 713,682 Effective search space: 387529326 Effective search space used: 387529326 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 132 (55.5 bits)