BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1151.p (247 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein... 142 2e-35 gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein... 138 3e-34 gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein... 120 6e-29 gi|134096030|ref|YP_001101105.1| 3-ketoacyl-(acyl-carrier-protei... 103 7e-24 gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrog... 101 4e-23 >gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 247 Score = 142 bits (357), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 86/243 (35%), Positives = 133/243 (54%), Gaps = 5/243 (2%) Query: 4 KIALVTGAARGLGESIARKMHAAGYKVALSDIDLEQVSAVAASLDASGATAMPLALDVRR 63 ++ALVTGA+RG+G +IA+ + G KV + +A++ L SG + LDV Sbjct: 9 QVALVTGASRGIGRAIAQALAKQGVKVIGTATSESGAAAISEYLAESGK---GVVLDVND 65 Query: 64 KPDFIAACDAIELRWGGATVLVNNAGRSRVAALMEITPEEWDEVTAINMKGTFLACQVFG 123 +A D I+ +G T+LVNNAG ++ M + EEWD V A N+ + Sbjct: 66 AARSVALIDEIQKEFGTVTILVNNAGITQDQLAMRMKDEEWDSVIATNLTSVGRLSRAVL 125 Query: 124 KRFAERGYGRIINVASLAGQNGGTATGAHYAAAKGAVLTLTKVFARELAGSGVTVNAISP 183 + + +GRIIN+ S+ G G A +YAAAK V +++ ARE+ +TVN ++P Sbjct: 126 RGMMKAKHGRIINITSVVGST-GNAGQMNYAAAKAGVAGMSRALAREIGSRNITVNCVAP 184 Query: 184 GPLDLPIVREIVPADKLAATIATIPVKTLGAPDFIADAVLLLASPDAGSATGACLDINGG 243 G +D + + + +++A + +P+ LG P+ IA AV LASP A TG L +NGG Sbjct: 185 GFIDTDMTKTL-SEQQISALLQQVPLGRLGVPEDIAAAVSFLASPQASYITGTTLHVNGG 243 Query: 244 LYM 246 +YM Sbjct: 244 MYM 246 >gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 240 Score = 138 bits (347), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 94/245 (38%), Positives = 128/245 (52%), Gaps = 8/245 (3%) Query: 3 KKIALVTGAARGLGESIARKMHAAGYKVALSDIDLEQVSAVAASLDASGATAMP-LALDV 61 KK ALV+G RGLG +IA + +AGY VA++ + AA + T++P DV Sbjct: 2 KKTALVSGGTRGLGAAIAIYLRSAGYAVAVT---YHHNADTAAEFRKN--TSIPVFCWDV 56 Query: 62 RRKPDFIAACDAIELRWGGATVLVNNAGRSRVAALMEITPEEWDEVTAINMKGTFLACQV 121 +EL G +LVNNAG +R A L +TP +W EV N+ F + Sbjct: 57 SDYAQCQEGIRQVELDVGPIDILVNNAGITRDAVLHHMTPGQWIEVINTNLGSVFNMSRN 116 Query: 122 FGKRFAERGYGRIINVASLAGQNGGTATGAHYAAAKGAVLTLTKVFARELAGSGVTVNAI 181 + ER +GRIIN++S+ G+ G A+YAAAK + TK A E A +TVNAI Sbjct: 117 VIEGMRERNFGRIINISSVNGERGQIGQ-ANYAAAKAGIFGFTKSLALESARKNITVNAI 175 Query: 182 SPGPLDLPIVREIVPADKLAATIATIPVKTLGAPDFIADAVLLLASPDAGSATGACLDIN 241 +PG D +V I P + L + IPV LG IA V+ LA +G TGA D+N Sbjct: 176 APGYCDTDMVSAI-PQEVLEKIVTGIPVGHLGTGSDIARLVVFLADNASGFITGATFDVN 234 Query: 242 GGLYM 246 GG +M Sbjct: 235 GGQFM 239 >gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 246 Score = 120 bits (301), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 121/245 (49%), Gaps = 4/245 (1%) Query: 4 KIALVTGAARGLGESIARKMHAAGYKVALSDIDLEQVSA-VAASLDASGATAMPLALDVR 62 ++ALVTG GLGE+I K+ A GY+V + + A++ ASG DV Sbjct: 3 RLALVTGGMGGLGEAICIKLAALGYQVVTTYSPSNTTAGEWLATMKASGYDFRAYPCDVS 62 Query: 63 RKPDFIAACDAIELRWGGATVLVNNAGRSRVAALMEITPEEWDEVTAINMKGTFLACQVF 122 I+ G VLVNNAG +R ++ +WD V N+ F + Sbjct: 63 DYDSAQQCVALIKKEIGEIDVLVNNAGITRDMTFKKMEKTDWDAVMGTNLDSVFNMTKPV 122 Query: 123 GKRFAERGYGRIINVASLAGQNGGTATGAHYAAAKGAVLTLTKVFARELAGSGVTVNAIS 182 ERG+GRIIN++S+ Q G +Y+AAK + TK A E+A VTVN IS Sbjct: 123 CDGMVERGWGRIINISSVNAQKGAFGQ-TNYSAAKAGMHGFTKALALEVARKAVTVNTIS 181 Query: 183 PGPLDLPIVREIVPADKLAATIA-TIPVKTLGAPDFIADAVLLLASPDAGSATGACLDIN 241 PG + +V I P D L I IP+ LG P+ +A V LAS +A TGA + IN Sbjct: 182 PGYIGTKMVTAI-PQDVLDTKIVPQIPMGRLGKPEEVAGLVAYLASDEAAFVTGANIAIN 240 Query: 242 GGLYM 246 GG +M Sbjct: 241 GGQHM 245 >gi|134096030|ref|YP_001101105.1| 3-ketoacyl-(acyl-carrier-protein) reductase [Herminiimonas arsenicoxydans] Length = 239 Score = 103 bits (257), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 128/242 (52%), Gaps = 6/242 (2%) Query: 4 KIALVTGAARGLGESIARKMHAAGYKVAL-SDIDLEQVSAVAASLDASGATAMPLALDVR 62 K ALVTG + G+G +I +++ A G V + ++ ++ SA+ ++ A G +A D+ Sbjct: 2 KRALVTGGSGGIGAAICKRLAADGLHVIVHANRGRDKASAICTAIIADGGSAEVAVFDIT 61 Query: 63 RKPDFIAACDAIELRWGGATVLVNNAGRSRVAALMEITPEEWDEVTAINMKGTFLACQVF 122 A + + L G VLVNNAG A +T +W V +++ G F Q Sbjct: 62 DAEATKVALETL-LEAGPVQVLVNNAGIHSDAVFPGMTSAQWHSVIDVSLHGFFNVTQPL 120 Query: 123 GKRFAERGYGRIINVASLAGQNGGTATGAHYAAAKGAVLTLTKVFARELAGSGVTVNAIS 182 +GRIINV+S+A G +Y+AAKGA+ + TK A ELA G+TVNA++ Sbjct: 121 TMPMIRTRWGRIINVSSIAAVTGNRGQ-VNYSAAKGALHSATKSLALELASRGITVNAVA 179 Query: 183 PGPLDLPIVREIVPADKLAATIATIPVKTLGAPDFIADAVLLLASPDAGSATGACLDING 242 PG + ++ E DK I +P+K G P+ +AD + LASP+A +G + ING Sbjct: 180 PGIIATGMIEEAFD-DKAIQNI--VPMKRAGKPEEVADLIGFLASPNAAYISGQIISING 236 Query: 243 GL 244 G+ Sbjct: 237 GM 238 >gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrogenase [Herminiimonas arsenicoxydans] Length = 264 Score = 101 bits (251), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 68/197 (34%), Positives = 105/197 (53%), Gaps = 3/197 (1%) Query: 1 MDKKIALVTGAARGLGESIARKMHAAGYKVALSDI-DLEQVSAVAASLDAS-GATAMPLA 58 + K AL+TG+ G+G IAR + G + L+ D +++A+ A L G + Sbjct: 6 LQGKTALITGSTSGIGLGIARALAQQGAHIVLNGFGDANEIAALQAGLTQDYGVQSTYHP 65 Query: 59 LDVRRKPDFIAACDAIELRWGGATVLVNNAGRSRVAALMEITPEEWDEVTAINMKGTFLA 118 D+ R + A ++G +LVNNAG VA + + E+WD + AIN+ F Sbjct: 66 ADMSRPQEIAAMMQFAAAKFGSVDILVNNAGIQHVADIEDFPVEKWDAIIAINLSSAFHT 125 Query: 119 CQVFGKRFAERGYGRIINVASLAGQNGGTATGAHYAAAKGAVLTLTKVFARELAGSGVTV 178 ++ E+ +GRIIN+AS G G+A + Y AAK ++ L+KV A E A +GVT Sbjct: 126 TRLALPAMKEKNWGRIINIASAHGLV-GSAQKSAYVAAKHGIVGLSKVTALENAQTGVTC 184 Query: 179 NAISPGPLDLPIVREIV 195 NAI PG + P+V++ V Sbjct: 185 NAICPGWVLTPLVQKQV 201 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.134 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 443,476 Number of extensions: 16958 Number of successful extensions: 99 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 75 Number of HSP's successfully gapped: 11 Length of query: 247 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 168 Effective length of database: 740,042 Effective search space: 124327056 Effective search space used: 124327056 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)