BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1147.p (352 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095723|ref|YP_001100798.1| putative porin transmembrane pr... 143 2e-35 gi|134093519|ref|YP_001098594.1| putative porin [Herminiimonas a... 125 3e-30 gi|134093520|ref|YP_001098595.1| putative porin [Herminiimonas a... 89 4e-19 gi|134096245|ref|YP_001101320.1| porin transmembrane protein [He... 67 9e-13 >gi|134095723|ref|YP_001100798.1| putative porin transmembrane protein [Herminiimonas arsenicoxydans] Length = 392 Score = 143 bits (360), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 126/386 (32%), Positives = 170/386 (44%), Gaps = 67/386 (17%) Query: 18 AHAQSSVSIYGLIDLGLTYYSNAAKSGGGGASLVRMDSGIAQGSRIGFKGSEDLGGGMNA 77 A AQ+ V+IYG+ D+ + Y SN GGAS M SG GSRIGFKG+EDLGGG A Sbjct: 23 AGAQNGVTIYGIADVAMVYSSNQ-----GGASNTYMRSGNLAGSRIGFKGTEDLGGGTQA 77 Query: 78 FFTLETGFGADDGSLGQGGLLFGRQSFVGLGSKDWGAISLGRQYDFMSNIGAQYAM--GA 135 F LE+GF D G + LF RQ+FVG+ + +GA++ GRQY Y + G Sbjct: 78 IFQLESGFNLDTGEMSSSSTLFNRQAFVGINNTRYGALTAGRQY-------TPYYLFVGP 130 Query: 136 LSPAGSLAWGLHADAAHGTALNDHIYGGDRTNNSIKYNSVKFSGFSFGAMYGFGEVAGNT 195 + P SL A L+ I R+NNSI Y S ++G A+ GFGE AG+ Sbjct: 131 IGPTNSLTGATGAHPGDIDGLDTTI----RSNNSITYTSPVWNGLQVSALAGFGETAGDM 186 Query: 196 TASRTISATGQYDNGGFSSALAYTDIKDATG------------------------SSSTR 231 + RTISA +YD ++ AL Y + ++ + S + Sbjct: 187 GSGRTISAAIKYDINNWNFALGYQRLNNSNNPGGVWSPNASANFNTSPVNNGYLSADSAQ 246 Query: 232 IYGIGARYQIGAFTPFGVITQAK-----NTATSAKATTYELG--TVYALTPLWDLSAAYQ 284 ARY +G ++ + N+ + KAT LG T Y +TP++ +S Y Sbjct: 247 YLAGAARYTMGKVIVGANASRVEYRPNGNSLFTQKATFDTLGLLTGYQMTPVFFVSVGYS 306 Query: 285 YQNRNLGVG-----KAQAFIAMADYKISKRTDLYVGAVYDRDKG----------YNAFPV 329 Y G K Y SKRT +Y Y KG A V Sbjct: 307 YTKEKAANGISDPAKYHQLALEQTYSFSKRTAIYFLEAYQVAKGNTLGLGGSGPVRAVAV 366 Query: 330 FG---GGAQSSMGNQTAVRLGMRHRF 352 G G S NQ +G+RH F Sbjct: 367 VGDSQNGTPSDGANQAVFMVGIRHSF 392 >gi|134093519|ref|YP_001098594.1| putative porin [Herminiimonas arsenicoxydans] Length = 357 Score = 125 bits (314), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 124/383 (32%), Positives = 171/383 (44%), Gaps = 57/383 (14%) Query: 1 MKKKLWVAAMLAAGTGMAHAQSSVSIYGLIDLGLTYYSNAAKSGGGGASLVRMDSGIAQG 60 MKK L A+L A G A AQSSV++YG++D+G+T A G L + SG Sbjct: 1 MKKSLLALAVLGAFAGAASAQSSVTVYGIVDMGITSQDTGA---GANDRLNGVTSGNQSA 57 Query: 61 SRIGFKGSEDLGGGMNAFFTLETGFGADDGSLGQ--GGLLFGRQSFVGLGSKDWGAISLG 118 SRIGFKG+EDLG G+ A F LE AD G L Q G F R + VGL S ++GA++LG Sbjct: 58 SRIGFKGTEDLGNGLKANFVLEQTIAADTGVLSQVDGKTAFNRFATVGL-SGNFGAVNLG 116 Query: 119 RQ-------YDFMSNIGAQYAMGALSPAGSLAWGLHADAAHGTALNDHIYGGDRTNNSIK 171 RQ YD + G G ++P ++ + +G R +NSIK Sbjct: 117 RQVSAIKDAYDAIDPFGDG---GTIAPISAIFFNAALKGDNG-----------RISNSIK 162 Query: 172 YNSVKFSGFSFGAMYGFGEVAGNTTASRTISATGQYDNGGFSSALAYTDIKDATG----- 226 Y S +SGF FGA Y FGE AG T A Y NG + Y D+T Sbjct: 163 YTSNSYSGFKFGAHYAFGEQAGRTGADSNYGLNLGYANGPLNVQFGYMSGDDSTAGAPGF 222 Query: 227 ----SSSTRIYGIGARYQIGAFTPFGVITQAKNTATSA----KATTYELGTVYALTPLWD 278 +S ++ +GA Y G +KN + K Y LG + Sbjct: 223 KPVKNSKDKMTFLGATYDFGVAKLHAAYGDSKNQPVAGNVDNKYRNYMLGVSAKVGAAGS 282 Query: 279 LSAAYQYQN-RNLGVGKAQAFIA-----MADYKISKRTDLYVGAVY---DRDKGYNAFPV 329 + A+Y + R G KA + M + +SKRT+LY G + D++ NA Sbjct: 283 IMASYTVNDTRTFGGVKANDRDSKRAGIMYAHDLSKRTNLYAGYSHTSNDKNAKLNALVA 342 Query: 330 FGGGAQSSMGNQTAVRLGMRHRF 352 G+ +G+RH+F Sbjct: 343 DQSGSM--------FAVGVRHKF 357 >gi|134093520|ref|YP_001098595.1| putative porin [Herminiimonas arsenicoxydans] Length = 363 Score = 88.6 bits (218), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 103/349 (29%), Positives = 150/349 (42%), Gaps = 31/349 (8%) Query: 20 AQSSVSIYGLIDLGLTYYSNAAKSGGGGASLVRMDSGIAQGSRIGFKGSEDLGGGMNAFF 79 A SS+S+YG ID G+ + +N SGG L +G +R+G KG E+LGGG+N F Sbjct: 30 APSSISMYGTIDSGIRHVTNTTASGGSTTKL--GSNGEYYNNRLGIKGMENLGGGLNMHF 87 Query: 80 TLETGFGADDGSL-GQGGLLFGRQSFVGLGSKDWGAISLGRQYDFMSNI-----GAQYAM 133 LE+GF G L + LF R S +G+ + +G++ GRQ QY Sbjct: 88 HLESGFNTGTGELDNKANRLFNRISSIGI-AGSFGSLDFGRQPSVACKAVYAYEPFQYRY 146 Query: 134 GALSP-AGSLAWGLHADAAHGTALNDHIYGGDRTNNSIKYNSVKFSGFSFGAMYGFGEVA 192 + P AG++A L + D G R +N +Y KF F+ A Y GEV Sbjct: 147 VHIIPLAGAVAGNLDGRVSRPFGTVD----GPRFSNGAQYFG-KFGSFTASAEYIMGEVP 201 Query: 193 GNTTASRTISATGQYDNGGFSSALAYTDIKDATGSSSTRIY------GIGARYQIGAFTP 246 G+ + Y++G F+ AYT G+ + Y G Y+I A Sbjct: 202 GSNRNQAAKAVGLVYNDGTFTVGGAYTRQNPNIGTVAASDYREQNQTTFGGGYKIDALRI 261 Query: 247 FGVITQAKNTATSAKATTYELGTVYALTPLWDLSAAY---QYQNRNLGVGKAQAFIAMAD 303 G + TA +++A LG Y TP L+A Y + + + I A Sbjct: 262 TGGYLKT-TTAITSQAKNIWLGARYDFTPAASLTAGYYRTTLETAQSEIARRNLLIVGAT 320 Query: 304 YKISKRTDLYVGAVYDRDKGYNAFPVFGGGAQSSMGNQTAVRLGMRHRF 352 Y +S RT LY G + P G+Q+ QT + G+ H F Sbjct: 321 YALSPRTSLYADIDQAVLHGLASLP---SGSQT---RQTGISAGISHIF 363 >gi|134096245|ref|YP_001101320.1| porin transmembrane protein [Herminiimonas arsenicoxydans] Length = 394 Score = 67.4 bits (163), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 78/274 (28%), Positives = 121/274 (44%), Gaps = 41/274 (14%) Query: 18 AHAQSSVSIYGLIDLGLTYYSNAAKSGGGGASLVRMDSGIAQGSRIGFKGSEDLGGGMNA 77 A AQSSV G +D + + SG G+ V SG+ + S G KG+E+LGGG+ A Sbjct: 26 ALAQSSVQFVGTVD---AFAGSLKNSGDAGSKSVVNSSGM-ETSWWGVKGTENLGGGLQA 81 Query: 78 FFTLETGFGADDGSLGQ--GGLLFGRQSFVGLGSKDWGAISLGRQY--DFM-----SNIG 128 F L + F D G+ G+ +F R + VGL S +G +S+GR +F+ S G Sbjct: 82 QFALSSFFRPDTGAQGRFDSDTMFSRDAHVGL-SGSFGRVSVGRDLAPNFIPTLTFSPFG 140 Query: 129 AQYAMGAL-----SPAGSLAWGLHADAAHGTALNDHIYGGDRTNNSIKYNSVKFSGFSFG 183 +A L +P+GS G + + G +N I Y K GF+ Sbjct: 141 GSFAFSPLELHTQTPSGSY---------RGQVWSPTVAGDTGWSNEIMYVMPKLGGFTTS 191 Query: 184 AMYGFGEVAG----NTTASRTISATGQYDNGGFSSALAYTDIKDATGSSSTRIYGIGARY 239 + FGE AG N + T+ G G + ++ + D+ S +R++ Sbjct: 192 LFFQFGEQAGKPGKNNYGANTMYEQGPLSFGAYFQSVKVNNPLDSVTSGDSRVF------ 245 Query: 240 QIGAFTPFGVITQAKNTATSAKATTYELGTVYAL 273 FTP+ T A T +++ T+ +G Y L Sbjct: 246 ---TFTPYNQATGATYTLAASRNDTWFVGGAYDL 276 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.317 0.134 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 677,381 Number of extensions: 28909 Number of successful extensions: 104 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 94 Number of HSP's successfully gapped: 4 Length of query: 352 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 269 Effective length of database: 726,862 Effective search space: 195525878 Effective search space used: 195525878 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)