BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1146.p
         (309 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096571|ref|YP_001101646.1| LysR family transcriptional reg...   159   2e-40

>gi|134096571|ref|YP_001101646.1| LysR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 319

 Score =  159 bits (402), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/319 (33%), Positives = 163/319 (51%), Gaps = 20/319 (6%)

Query: 3   TFNNMDLNLLRVFQAIADERSLTLAGNRLHLSQPAVSYALGRLRQIFDDPLFIRTKEGMQ 62
           +F  +DLNLLRVF A+  E++LT A N L ++QPAVS AL RLR    D L IRT  G++
Sbjct: 2   SFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDALGDELVIRTAHGVK 61

Query: 63  PTPAALELAKPINRALQAVQDALRYTERFDPAASTRVFRASMTDVAEMMFLPQLCELLTA 122
           PT  A EL   + RAL  ++ A+   + FD + +T  FR +M D    ++LP L   +  
Sbjct: 62  PTSRATELWPVVRRALSDLETAV-TPDTFDVSRATTTFRMAMADATAALWLPFLVRAIEK 120

Query: 123 QAPHTRLQVEQVPPAHLE--EALRTGQLDFAFGNLPALKTVTC-----------HELLFR 169
           +AP   L V  VP    E    L  G +D A G  P +                HE L+ 
Sbjct: 121 EAPG--LNVRMVPLTTREPRPMLLRGDIDLAIGFFPGVAAQLASGQNTAVSQIRHERLYT 178

Query: 170 ETYVCMMRKRPELPARAQLTLDEFLALSHVLVESAESSHHQVEHSFRTLGVQRKISLSIP 229
             YVC+MRK   L A+ +LTLD + A  H+LV  +  +   ++ +   +G +R+I L++ 
Sbjct: 179 GEYVCVMRKNHPL-AKEELTLDTYCAAHHLLVSFSGRAKGLMDDALSEVGRERRILLTVN 237

Query: 230 HFTVLPRILGKSDLVATVPARIAKLFHSEHPDVFLSYELPVKLPTVDITLHWHQAFDADA 289
            F    R++  SDL+  +P  +  +  +   +  ++ +LP  LP V + + WH+    + 
Sbjct: 238 QFFTAGRVVASSDLITVLPRHL--IASTGMEEALIAKDLPFSLPEVHVDMLWHERDARNP 295

Query: 290 GNSWLR-QIVIDLLQSYGR 307
            + WLR Q++       GR
Sbjct: 296 AHKWLREQLITSTDDGIGR 314


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 564,747
Number of extensions: 21947
Number of successful extensions: 115
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 3
Length of query: 309
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 228
Effective length of database: 733,452
Effective search space: 167227056
Effective search space used: 167227056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)