BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1145.p (391 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093455|ref|YP_001098530.1| aspartyl/glutamyl-tRNA amidotra... 82 3e-17 gi|134095844|ref|YP_001100919.1| putative amidase [Herminiimonas... 69 4e-13 gi|134095304|ref|YP_001100379.1| amidase [Herminiimonas arsenico... 66 3e-12 gi|134096406|ref|YP_001101481.1| putative amidase [Herminiimonas... 62 7e-11 >gi|134093455|ref|YP_001098530.1| aspartyl/glutamyl-tRNA amidotransferase subunit A [Herminiimonas arsenicoxydans] Length = 485 Score = 82.4 bits (202), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/129 (44%), Positives = 75/129 (58%), Gaps = 3/129 (2%) Query: 59 AEVVQRLLDTGWQIIARANMHELAYGMTGINDWNGTPVNPQDPGRMTGGSSSGSASAVGA 118 A VV+ G + + N E A G + N + G NP D + GGSS GSA+A+ A Sbjct: 100 ATVVENFNQAGMVTLGKLNCDEFAMGSSNENSYFGAVKNPWDKTAIPGGSSGGSAAAIAA 159 Query: 119 GLVDLSIGSDTGGSIRLPAACCGVIGLKPTFGRVSRAGAYPAISSLDCVGPVARSME--- 175 L S +DTGGSIR PAA CGV G+KPT+GRVSR G SSLD GP+A++ E Sbjct: 160 RLTPASTATDTGGSIRQPAALCGVTGIKPTYGRVSRFGMIAFASSLDQGGPIAKTAEDCG 219 Query: 176 MIIRAMTSI 184 +++ AM S Sbjct: 220 LLLNAMVSF 228 >gi|134095844|ref|YP_001100919.1| putative amidase [Herminiimonas arsenicoxydans] Length = 469 Score = 68.9 bits (167), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 102/383 (26%), Positives = 155/383 (40%), Gaps = 62/383 (16%) Query: 25 NGPTVAIKDCIDIAGQPTCGGSAALADAPPAQSHAEVVQRLLDTGWQIIARANMHELAYG 84 +G +++KD I + G GS A+ + AQ A V R+ G I+ + E Sbjct: 75 HGLPISVKDLIAVGGVRQTFGSRAMENNI-AQVDAPSVARVKAAGACIVGISTTSEFGCK 133 Query: 85 MTGINDWNGTPVNPQDPGRMTGGSSSGSASAVGAGLVDLSIGSDTGGSIRLPAACCGVIG 144 G + G NP + + GGSS G+A++V AG+ ++G+D GGSIR P++ G+ G Sbjct: 134 AVGDSPLTGITRNPWNIEKTPGGSSCGAAASVAAGVTPFALGTDGGGSIREPSSFTGLFG 193 Query: 145 LKPTFGRVSRAGAYP--AISSLDCVGPVARSMEMIIRAMTSIAPGFDRVAASAAAAHARV 202 +K F RV +P A +L VGP+ARS+ ++ IA G D AR Sbjct: 194 IKAQFARVP---VFPASATPTLAHVGPLARSVRDAALLLSVIA-GHD----------ARD 239 Query: 203 KRVTVQADDDVAAAVAQAFSASRWSATWWTPQHMHAAFEAGMTLINRETHDAFGHLLG-- 260 + D AA R + W+P +A +A + I F LG Sbjct: 240 PFSVAEDVPDFLAACDAPIKGMRLA---WSPDLGYAKPDAEIVRITEAAVKKF-EALGCE 295 Query: 261 ----QGKLGAD-----IEQRLAAAATTTDAAVADAERV---------------------- 289 +G +G+D + + A T + + D + Sbjct: 296 IIELKGGIGSDPADMWLAEFYAGVGTRLHSVMRDQRELLDPVVVATLDKALDQSLLSYYS 355 Query: 290 ----RAAFSAEVDAALADADALLLPTLPALPPT----LQAIRQGTSVLLLSSLVRPFNLS 341 R F ++ + D LL PT P P + A ++ PFNL+ Sbjct: 356 KVFERYQFREKMRSMFTSFDLLLTPTAPIAAPNVGVDVPAQFADRNICSWQYYTYPFNLT 415 Query: 342 GHPALTIPVPIAGSTLKAGLQLV 364 G PA ++PV S L GLQLV Sbjct: 416 GQPAASLPVGFTQSGLPVGLQLV 438 >gi|134095304|ref|YP_001100379.1| amidase [Herminiimonas arsenicoxydans] Length = 427 Score = 66.2 bits (160), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/171 (35%), Positives = 84/171 (49%), Gaps = 9/171 (5%) Query: 7 RTIAGSGNALLSRFHLGG--NGPTVAIKDCIDIAGQPTCGGSAALADAPPAQSHAEVVQR 64 R +A +L H+ G +G + IKD ID PT GS A P + A V Sbjct: 43 RDLAIKEASLRDSQHVQGPLHGVPIGIKDVIDTIDLPTEYGSTIYAGHRP-RREASCVSL 101 Query: 65 LLDTGWQIIARANMHELAYGMTGINDWNGTPVNPQDPGRMTGGSSSGSASAVGAGLVDLS 124 + G I+ + E A G NP +P GGSSSGSA+AV V ++ Sbjct: 102 VRRAGGVILGKTVTTEFALYQPG------KTTNPHNPAHTPGGSSSGSAAAVADFHVPVA 155 Query: 125 IGSDTGGSIRLPAACCGVIGLKPTFGRVSRAGAYPAISSLDCVGPVARSME 175 +G+ T GSI PA+ CGV+G KPTF + G P +SLD +G + R+++ Sbjct: 156 MGTQTSGSIIRPASYCGVVGYKPTFNTFALEGTKPLAASLDTLGYLTRTVD 206 >gi|134096406|ref|YP_001101481.1| putative amidase [Herminiimonas arsenicoxydans] Length = 437 Score = 61.6 bits (148), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 102/369 (27%), Positives = 153/369 (41%), Gaps = 42/369 (11%) Query: 25 NGPTVAIKDCIDIAGQPTCGGSAALADAPPAQSHAEVVQRLLDTGWQIIARANMHELAYG 84 +G + +KD +D A PT GS A P Q+ A V + G I+ + E A Sbjct: 69 HGVPIGVKDLMDTADMPTTYGSPIYAGHQP-QTDAICVAACRNAGAVIMGKTVTTEFA-- 125 Query: 85 MTGINDWNGTPVNPQDPGRMTG--------GSSSGSASAVGAGLVDLSIGSDTGGSIRLP 136 G NP + G GSSSGSA+AV G+V ++ G+ T GSI P Sbjct: 126 ----TFHPGPTCNPHRTHKADGTLQVHTPGGSSSGSAAAVACGMVPVAFGTQTAGSIVRP 181 Query: 137 AACCGVIGLKPTFGRVSRAGAYPAISSLDCVGPVARSM---EMIIRAMTSIAPGFDRVAA 193 AA CGV+G KPT+G + AG SLD VG +ARS+ I ++ + ++ Sbjct: 182 AAYCGVVGYKPTYGMLPLAGIKSLSPSLDTVGVLARSVGDAAFFIGTLSRLP-----LSP 236 Query: 194 SAAAAHARVK----------RVTVQADDDVAAAVAQAFSASRWSATWWTPQHMHAAFEAG 243 A A R++ R + A + AV+ +A + P EA Sbjct: 237 LPAVAQTRLRLGICRTQHWDRASHDARTALERAVSLLEAAGARLSDVSLPDQCKGLSEAQ 296 Query: 244 MTLINRETHDAFGHLLGQGKLG-ADIEQRLAAAATTTDAAVA-DAERVRAAFSAEVDAAL 301 M ++ E AF G ++ R AA D A A+ + A + Sbjct: 297 MRIMGFEAALAFAPEAQANPDGFSNAFVRFIAAGNAIDGATYFAAQELAVAARCALTGIF 356 Query: 302 ADADALLLPTLPALPPTLQAIRQGTSVLLLSSLVRPFNLSGHPALTIPVPIAGSTLKAGL 361 D D LL P+ + P A + T + + R + L G+P + +P+ + G+ Sbjct: 357 NDVDILLAPSTEGVAP---AGLEATGDPIFN---RMWTLLGNPCVHVPLGTGAGGMPIGV 410 Query: 362 QLVG-RKGD 369 L+G R GD Sbjct: 411 TLIGPRWGD 419 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.317 0.131 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 620,477 Number of extensions: 22086 Number of successful extensions: 73 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 72 Number of HSP's successfully gapped: 4 Length of query: 391 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 307 Effective length of database: 723,567 Effective search space: 222135069 Effective search space used: 222135069 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)