BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1144.p
         (428 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093556|ref|YP_001098631.1| choline monooxygenase [Herminii...    75   7e-15

>gi|134093556|ref|YP_001098631.1| choline monooxygenase
           [Herminiimonas arsenicoxydans]
          Length = 366

 Score = 75.1 bits (183), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 109/228 (47%), Gaps = 19/228 (8%)

Query: 22  DAVVDPSLYTDPAIFEVEMDKIFYRTWIWVAHESEIKNPGDFKTAQIGRQPVIVVRDKSG 81
           +A +  ++Y D A+ + E+ ++F     +  HE  + N GDF T     +  ++VR+  G
Sbjct: 14  NAQLPVNVYFDEALLKQEIQQLFRDGPRYAGHELMVPNVGDFATLAWENEGRMLVRNPQG 73

Query: 82  KINVLENRCRHRGATVCEKHKGNATGFTCPYHSWSYGLDGKLRGLPYPEGYEDVIEKADL 141
            I +L N CRHR A +    +G+A+   CP H W+Y L G+L G P+  G    +  ++ 
Sbjct: 74  -IELLSNVCRHRQAKMFNG-RGHASNIVCPLHRWTYDLKGELIGAPH-FGETPCLNLSNT 130

Query: 142 PLQSLRTESYHGMIFASFNQEIEPLSDFLGHAKKWIDLFMKQGAGFPIKVQGEHKFSFKG 201
           PLQ     +++G++F     ++  +   LG  K  +D      +G+ +     H  ++  
Sbjct: 131 PLQ-----NWNGLLFERNGVDVAKILGNLGVTKD-LDF-----SGYMLDHIEVHDCNY-- 177

Query: 202 NWKIQLENTTDGYHFPVVHKTFLSSVDEETSEMLSFMTDDQSITRSLG 249
           NWK  +E   + YH    H    S V   + + L +   DQ   +++G
Sbjct: 178 NWKTFIEVYLEDYHVEPFHPGLGSFV---SCDDLKWEFGDQYSVQTVG 222


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 911,283
Number of extensions: 39769
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 344
Effective length of database: 723,567
Effective search space: 248907048
Effective search space used: 248907048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)