BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1142.p
         (318 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093902|ref|YP_001098977.1| putative flavohemoprotein [Herm...    57   1e-09

>gi|134093902|ref|YP_001098977.1| putative flavohemoprotein
           [Herminiimonas arsenicoxydans]
          Length = 397

 Score = 57.0 bits (136), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 91/215 (42%), Gaps = 35/215 (16%)

Query: 11  ETGDIRSFRLVRADGAALPAYEPGAHIDVTG--PTGI--VRQYSLCGPLEDRCGYTIAVK 66
           E+  + S+ +V  D   LP ++PG ++ V    P G+  +RQYSL     D     I+VK
Sbjct: 162 ESAQVTSYSMVAVD-RQLPEFQPGQYVSVAVFLPDGLRQLRQYSLSES-PDHQHLRISVK 219

Query: 67  REPASRGGSAA-----LHDTVQLGMELEVGTPRNLFALDARAPEHL-LFGAGIGVTPLLA 120
           RE A     A      LHD V +G  L V  P   F  D    + + L  AG+G+TP+++
Sbjct: 220 REVAGAETPAGVVSNWLHDNVVVGSILPVSMPAGDFTPDTDGEDPIVLLSAGVGITPMIS 279

Query: 121 MAYRLWAEQKPFTLHYFVRARE-------HAAFVDLLENAPFAAQVCFHYAVMPAQMEHY 173
              R+ A+  P     F  A          A     + + P    V F+      + EH 
Sbjct: 280 ALNRI-AKVSPRRRVIFAHAARNAHHHPHRADIAKAVASMPNLHSVTFY-----EEAEHD 333

Query: 174 LAACLAA----------GSKEAHVYTCGPAPFMEA 198
               LA             K++ VY CGP PFM+A
Sbjct: 334 DETSLAGRMELQKLPQWDVKKSQVYMCGPLPFMQA 368


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 626,432
Number of extensions: 26338
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 236
Effective length of database: 730,157
Effective search space: 172317052
Effective search space used: 172317052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)