BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1139.p (515 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 411 e-116 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 399 e-112 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 396 e-111 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 351 5e-98 gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis pro... 341 5e-95 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 411 bits (1057), Expect = e-116, Method: Compositional matrix adjust. Identities = 255/518 (49%), Positives = 348/518 (67%), Gaps = 16/518 (3%) Query: 2 IKNIRIGSRLGAGFAVVLVFSMVVAAVGIWRLQTVAQQTREMMDVPLKTERLVGQWNTLL 61 KN++IG RLG F ++LV + +G+ RLQ VA+ T M + +K ERL QW + Sbjct: 3 FKNLKIGVRLGMAFGLLLVLMAFMTVMGVLRLQDVAKATVLMEEATIK-ERLAQQWIKGI 61 Query: 62 LIAIQRTTTVVKSHDPELEAFLGKEAAASSKESAQTLKDVEQLLTSDEEKKMFAAINVAR 121 RT V++ DPE + L +E +A S ++ ++E L+ S E KK+ A + R Sbjct: 62 ETNTVRTFARVRTSDPEQDKILQQEMSAISAAVSKQQDELETLVVSAEGKKLLATVAEKR 121 Query: 122 KQFLTIRDQIYAAKKQGDAAKVEELYQKQYVGIAANTQGAMRALLD-----FE--RARID 174 + IRD + ++ A + K A Q ++ A+++ FE + R+D Sbjct: 122 ATYTAIRDDVMNLREARGAELQNAIANKMKPAADAYIQ-SVEAVVNAQINNFEDAKGRVD 180 Query: 175 EISADIQQDAASSQWQIFALEAVILLCGIAFAVLLTRSITRPVNAALAISQRVAAGDLTS 234 I S++ + L V L GI A +LTRSIT+P++ A+++++ VA+GDLT Sbjct: 181 TIYQ-------SARMLLIVLGLVALTLGIVLAWMLTRSITKPLDYAVSVARLVASGDLTG 233 Query: 235 RAQPMGRDELGQLVASLQGMSERLHGVVSTVRLGADSIAVASGEIANGNLDLSARTEEQA 294 R +DE GQL+ +L+ M++ L ++ VR G D+IA AS +IA+GNLDLS+RTEEQA Sbjct: 234 RITVDSKDETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQA 293 Query: 295 GALEETAASIEQLTSSVRTNSEHAHQANDLVKSAASIAGQGGVVMDELIATMGNINESSR 354 +LEETA+S+E+LTS+V+ N+++A QAN L +A+ +A +GG V+ +++ TM IN S+R Sbjct: 294 SSLEETASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTSAR 353 Query: 355 KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAAAKEIKQ 414 KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAAAKEIK Sbjct: 354 KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKT 413 Query: 415 LIDDSVEKVGAGSQLVEKAGKTMQEVVGSVQGAHTLVGEISTASREQAEGIHQVNQAVSQ 474 LIDDSV+KV GS+LV +AG TM EVV SV+ ++ EI AS+EQ+ GI QVNQA+ Q Sbjct: 414 LIDDSVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIGQ 473 Query: 475 MDGVTQQNAALVEQAAAAAKSLEDQAAQLKRAVAFFAL 512 MD VTQQNAALVE+AAAAA+SL +QAA L +AV+ F L Sbjct: 474 MDQVTQQNAALVEEAAAAAESLNEQAANLAQAVSIFKL 511 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 399 bits (1026), Expect = e-112, Method: Compositional matrix adjust. Identities = 256/518 (49%), Positives = 345/518 (66%), Gaps = 12/518 (2%) Query: 2 IKNIRIGSRLGAGFAVVLVFSMVVAAVGIWRLQTVAQQTREMMDVPLKTERLVGQWNTLL 61 I N++IG RLG FAVVL+ + +G+WRLQ VAQ T M + + ERL QW+ Sbjct: 3 ITNLKIGVRLGLAFAVVLLLMASMMVIGVWRLQEVAQATVRMEEAA-EQERLSIQWHAGN 61 Query: 62 LIAIQRTTTVVKSHDPELEAFLGKEAAASSKESAQTLKDVEQLLTSDEEKKMFAAINVAR 121 RTT ++S + E++ E A S E + +E L+ S+E KK+ +A+ R Sbjct: 62 SANAIRTTARIRSTNQEVQQQFQNEMTAQSVEITKLQNKLESLIHSEEGKKLMSAVGDKR 121 Query: 122 KQFLTIRDQIYAAKKQGDAAKVEELYQKQYVGIAANTQGAMRA-------LLDFERARID 174 ++ IR +++ K G A EE + IA+ A+ ++DF++ Sbjct: 122 TVYMDIRKEVFKLKADGSPAAEEEAKKI----IASKMDPALETYSKTVQDVVDFQQVTFL 177 Query: 175 EISADIQQDAASSQWQIFALEAVILLCGIAFAVLLTRSITRPVNAALAISQRVAAGDLTS 234 E ++ AS + + L A+ L A LL+RSITRP+ A+ +++ VA GDL + Sbjct: 178 EAKTEVDNLYASGRMFLLTLGAIALALSALLAWLLSRSITRPLEYAVEVARTVAGGDLRN 237 Query: 235 RAQPMGRDELGQLVASLQGMSERLHGVVSTVRLGADSIAVASGEIANGNLDLSARTEEQA 294 R + DE GQL+ +L+ M++ L VS VR G ++IA AS +IA GNLDLS+RTEEQA Sbjct: 238 RIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQIAAGNLDLSSRTEEQA 297 Query: 295 GALEETAASIEQLTSSVRTNSEHAHQANDLVKSAASIAGQGGVVMDELIATMGNINESSR 354 +LEETA+S+E+LTS+V+ N+++A QAN L SA+ +A +GGVV+ +++ TM +IN S++ Sbjct: 298 SSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVVVSQVVDTMEDINSSAK 357 Query: 355 KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAAAKEIKQ 414 KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSAAAAKEIK Sbjct: 358 KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKT 417 Query: 415 LIDDSVEKVGAGSQLVEKAGKTMQEVVGSVQGAHTLVGEISTASREQAEGIHQVNQAVSQ 474 LI DSV+KV GS+LV +AG TM+EVV SV+ ++ EI AS+EQ+ GI QVNQA+ Q Sbjct: 418 LIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAASQEQSAGIEQVNQAIGQ 477 Query: 475 MDGVTQQNAALVEQAAAAAKSLEDQAAQLKRAVAFFAL 512 MD VTQQNAALVE+AAAAA+SL +QA +L AV+ F L Sbjct: 478 MDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKL 515 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 396 bits (1017), Expect = e-111, Method: Compositional matrix adjust. Identities = 245/510 (48%), Positives = 340/510 (66%), Gaps = 1/510 (0%) Query: 2 IKNIRIGSRLGAGFAVVLVFSMVVAAVGIWRLQTVAQQTREMMDVPLKTERLVGQWNTLL 61 I N++IG+RLG GF ++L+ + A GI RL+ + +R ++D L ++ W Sbjct: 3 IANMKIGTRLGLGFGLILLLVAAMGATGIMRLENINGASRHLVDDSLSMQKSAQNWLLGT 62 Query: 62 LIAIQRTTTVVKSHDPELEAFLGKEAAASSKESAQTLKDVEQLLTSDEEKKMFAAINVAR 121 + RT +VK+ DPE + F K A SK+ + K +E + SD+EK++FA + R Sbjct: 63 SVNASRTLALVKASDPESQEFFQKAITAQSKQITEIQKSIEDRINSDKEKELFAEVAKKR 122 Query: 122 KQFLTIRDQIYAAKKQGDAAKVEELYQKQYVGIAANTQGAMRALLDFERARIDEISADIQ 181 ++ IR I K G+ A+ ++ + V +++ +L + I Sbjct: 123 SAYIDIRKSILGVKAGGNIAEANQMIDTKMVPALDAYVDSVKNVLGHYENEVKLADESIT 182 Query: 182 QDAASSQWQIFALEAVILLCGIAFAVLLTRSITRPVNAALAISQRVAAGDLTSRAQ-PMG 240 D S + + + +L G A LT ITRP++ AL +++ VA GDLT+R+ Sbjct: 183 DDYLSGRMALIIGAVIAILLGTLIAWRLTVGITRPLHEALKVAESVAEGDLTARSDMAET 242 Query: 241 RDELGQLVASLQGMSERLHGVVSTVRLGADSIAVASGEIANGNLDLSARTEEQAGALEET 300 +DE G L+++L M L V+ +RLG D+IA AS EIA+GNLDLS+RTE+QA +LEET Sbjct: 243 QDEPGLLLSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSSRTEQQASSLEET 302 Query: 301 AASIEQLTSSVRTNSEHAHQANDLVKSAASIAGQGGVVMDELIATMGNINESSRKIVDII 360 A+S+E+LTS+V+ N++++ QAN L +A+++A +GG V+ +++ TMG IN S++KIVDII Sbjct: 303 ASSMEELTSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAINNSAKKIVDII 362 Query: 361 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAAAKEIKQLIDDSV 420 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRSAAAAKEIK LI DSV Sbjct: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKTLIGDSV 422 Query: 421 EKVGAGSQLVEKAGKTMQEVVGSVQGAHTLVGEISTASREQAEGIHQVNQAVSQMDGVTQ 480 EKV AGS+LV +AG TM E+V V+ ++ EI+ AS+EQ++GI QVNQAVSQMD VTQ Sbjct: 423 EKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAVSQMDQVTQ 482 Query: 481 QNAALVEQAAAAAKSLEDQAAQLKRAVAFF 510 QNAALVE+AAAAA+SL+DQA L AV+ F Sbjct: 483 QNAALVEEAAAAAESLQDQARNLAEAVSVF 512 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 351 bits (900), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 249/523 (47%), Positives = 330/523 (63%), Gaps = 22/523 (4%) Query: 1 MIKNIRIGSRLGAGFAVVLVFSMVVAAVGIWRLQTVAQQTREMMDVPLKTERLVGQWNTL 60 M+KNI I S L V+ + S+++ A GI L ++ + + V +GQ NT+ Sbjct: 1 MLKNITIKSLL---LFVMGILSLLLIATGILGLTSLDTTNKALRSVYEDRTVPIGQLNTV 57 Query: 61 LLIAIQRTTTVVKS--HDPELEAFLGKEAAASSKESAQTLKDVEQLLTSDEEKKMFAAIN 118 + ++ + S DP L SKE Q + E K + Sbjct: 58 ITLSTINQLDLAASIYGDPGLVIPKMDAIEKHSKEINQAFDAFMASTLTPEAKVLADKFA 117 Query: 119 VARKQFLTIRDQI-YAAKKQGDAAKVEELYQKQYVGIAANTQGAMRALLDFERARIDEIS 177 RK FL Q AA + G+ +V E+ + + + AL+D E + E Sbjct: 118 ADRKIFLEKALQPAIAASRGGNVLRVTEIVNGPMEELITPVRAGVAALIDLE---LREAK 174 Query: 178 ADIQQDAASSQWQIFALEAVILLCGIAFAVLLT--------RSITRPVNAALAISQRVAA 229 ++ SQ + F + I + I F VLL R I RP++ A+ I++ VAA Sbjct: 175 KAFEE----SQTR-FVMVRNISIGAIIFGVLLAGFMAFWLIRLIARPLHDAVQIARSVAA 229 Query: 230 GDLTSRAQPMGRDELGQLVASLQGMSERLHGVVSTVRLGADSIAVASGEIANGNLDLSAR 289 GDLT + +E GQL+ +L+ M++ L VS VR G ++I VASGEIA+GN DLS+R Sbjct: 230 GDLTQQIHVNSTNETGQLLQALKDMNDSLSKTVSAVRRGTETITVASGEIASGNADLSSR 289 Query: 290 TEEQAGALEETAASIEQLTSSVRTNSEHAHQANDLVKSAASIAGQGGVVMDELIATMGNI 349 TE QAG+LEETA+S+E+LTS+VR N+++A QAN LV SA +A +GG V+ E++ TMG+I Sbjct: 290 TEAQAGSLEETASSMEELTSTVRQNADNARQANQLVVSATEVAVKGGSVVSEVVITMGSI 349 Query: 350 NESSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAAA 409 +SSRKIVDIIGVID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA AA Sbjct: 350 KDSSRKIVDIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAGAA 409 Query: 410 KEIKQLIDDSVEKVGAGSQLVEKAGKTMQEVVGSVQGAHTLVGEISTASREQAEGIHQVN 469 KEIK LIDDSV KV AGS+LV++AG TMQE+V SV+ ++ EI++AS+EQ++GI QVN Sbjct: 410 KEIKALIDDSVHKVDAGSKLVDQAGSTMQEIVTSVKHVADIMSEITSASQEQSDGIEQVN 469 Query: 470 QAVSQMDGVTQQNAALVEQAAAAAKSLEDQAAQLKRAVAFFAL 512 QA+SQMD +TQQNAALVEQAAAAA+S++DQA +L AVA F L Sbjct: 470 QAISQMDEMTQQNAALVEQAAAAAQSMQDQAVELSGAVAIFKL 512 >gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 573 Score = 341 bits (874), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 238/528 (45%), Positives = 330/528 (62%), Gaps = 26/528 (4%) Query: 1 MIKNIRIGSRLGAGFAVVLVFSMVVAAVGIWRLQTVAQQTREMMDVPLKTERLVGQWNT- 59 M KN+ +G++L + F + V +VA +GI+ + + + ++ + L + N Sbjct: 1 MFKNMTVGTKLISSFLTLSVAGAIVAGIGIYNMGKINDKAGDIYNQELMGLSYIKDANID 60 Query: 60 LLLIAIQRTTTVVKSHDPELEAFLGKE----AAASSKESAQTLKDVEQLLTSDEEKKMFA 115 LL I R ++ + E E L KE AS+KE+ L + L SD K +FA Sbjct: 61 LLFIGRARGNVLLST--TEEERTLNKENIKKYLASAKEN---LAKAQPLFVSDSAKALFA 115 Query: 116 AINVARKQFLTIRDQIYAAKKQGDAAKVEELYQKQYVGIA-----ANT-QGAMRALLDFE 169 + + +++ A D +++ + +A ANT + L + Sbjct: 116 KYATVSQDY---EKEMWRALALADKEPLQQRSAELTTSMAQTRLHANTLDNVLTELSKQK 172 Query: 170 RARIDEISADIQQDAASSQWQIFALEAVILLCGIAFAVLLTRSIT-----RPVNAALAIS 224 R + + +Q SS+ + L + GI VL+TR++ P N A ++ Sbjct: 173 EVRAAQAHVETEQLYDSSRAFMVLLVILSAFSGILLGVLITRNLKGQLGGEP-NYAAGVA 231 Query: 225 QRVAAGDLTSRAQPMGRDELGQLVASLQGMSERLHGVVSTVRLGADSIAVASGEIANGNL 284 R+AAGDLT +D+ L A ++ M + L +VS VR G D+I ASG+IA GNL Sbjct: 232 ARIAAGDLTVAIDLRSKDQTSMLFA-MREMRDSLASIVSQVRSGTDTITTASGQIAAGNL 290 Query: 285 DLSARTEEQAGALEETAASIEQLTSSVRTNSEHAHQANDLVKSAASIAGQGGVVMDELIA 344 DLS+RTEEQA ALEETA+S+E++TS+V+ N+E++ QA+ L A+S A +GG V+ +++ Sbjct: 291 DLSSRTEEQASALEETASSMEEITSTVKQNAENSQQASTLAVHASSTAIRGGAVVSQVVD 350 Query: 345 TMGNINESSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQR 404 TMG+I ESSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQR Sbjct: 351 TMGSITESSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQR 410 Query: 405 SAAAAKEIKQLIDDSVEKVGAGSQLVEKAGKTMQEVVGSVQGAHTLVGEISTASREQAEG 464 SA+AAKEIKQLI DSVEKV AGS+LVE+AG TM+E+VG +Q ++ +I+ A REQ+ G Sbjct: 411 SASAAKEIKQLIGDSVEKVDAGSKLVEQAGTTMKEIVGGIQRVADIMSDITAAGREQSAG 470 Query: 465 IHQVNQAVSQMDGVTQQNAALVEQAAAAAKSLEDQAAQLKRAVAFFAL 512 I QVNQA++QMD VTQQNAALVE+AAAA++SL+DQA L V+ F L Sbjct: 471 IEQVNQAIAQMDEVTQQNAALVEEAAAASQSLQDQATHLSEIVSVFKL 518 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.315 0.127 0.329 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 666,660 Number of extensions: 22313 Number of successful extensions: 180 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 146 Number of HSP's successfully gapped: 14 Length of query: 515 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 429 Effective length of database: 716,977 Effective search space: 307583133 Effective search space used: 307583133 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)