BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1138.p
         (258 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096286|ref|YP_001101361.1| putative sulfite oxidase subuni...    75   2e-15

>gi|134096286|ref|YP_001101361.1| putative sulfite oxidase subunit
           YedY [Herminiimonas arsenicoxydans]
          Length = 326

 Score = 75.5 bits (184), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 86/197 (43%), Gaps = 31/197 (15%)

Query: 91  DPFPFNAFYE---EFNAPDIDGSA-----WRLEVSGLVSDKRPWTLE---RLRALPQAGQ 139
           D   +N FYE   +  +P    +A     W L + G V  K+P TL+    L+  P   +
Sbjct: 81  DATTYNNFYEFGTDKESPSRYAAAMKTRPWTLTIEGEV--KKPMTLDIDSLLKLAPLEER 138

Query: 140 ITRHICIEGWSAIGQWSGVPLRLFLQAVGADLTARYVGFKCADR---------------Y 184
           I R  C+EGWS +  WSG  L   ++ V     A+YV F  A+                Y
Sbjct: 139 IYRLRCVEGWSMVIPWSGYSLAELIKKVEPTSNAKYVEFVTAEDKEAMHGLRRAVLDWPY 198

Query: 185 YSSLDMPTALHPQTILALDFGQQALPTAYGYPLKVRVPTKLGFKNPKHVVAIFVSNQNPG 244
              L +  A HP T+L L    + LP   G P++V VP K GFK+ K +V I      P 
Sbjct: 199 VEGLRIDEANHPLTLLTLGMYGEVLPNQNGAPVRVIVPWKYGFKSAKSIVKIRFVRDQPR 258

Query: 245 GYWE---DQGYNWFSGI 258
             W     + Y ++S +
Sbjct: 259 TAWNLAAPREYGFYSNV 275


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.136    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 501,375
Number of extensions: 20116
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 178
Effective length of database: 736,747
Effective search space: 131140966
Effective search space used: 131140966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)