BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1129.p (262 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein... 86 3e-18 gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein... 70 1e-13 gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrog... 66 2e-12 gi|134093825|ref|YP_001098900.1| oxidoreductase [Herminiimonas a... 60 1e-10 gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein... 59 3e-10 >gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 247 Score = 85.5 bits (210), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 77/256 (30%), Positives = 122/256 (47%), Gaps = 22/256 (8%) Query: 9 RFAGKVAVVTGAAQGILRGVALGIAAEGGQVLLVDRADFIDEVAAQAEAGRGSGFVADLE 68 AG+VA+VTGA++GI R +A +A +G +V+ ++ ++ A G G V D+ Sbjct: 5 ELAGQVALVTGASRGIGRAIAQALAKQGVKVIGTATSESGAAAISEYLAESGKGVVLDVN 64 Query: 69 TYAGAQAAMAQAIARYGRIDILINGVG---GAIRMRPYDQFEAAQIDAEIRRSLMPTLYG 125 A + A + + +G + IL+N G + MR D+ + D+ I +L Sbjct: 65 DAARSVALIDEIQKEFGTVTILVNNAGITQDQLAMRMKDE----EWDSVIATNLTSVGRL 120 Query: 126 CHAVLPYLLRQGSGTIVNVSS--NATRGIRRVPYSAAKGGVNAMTTALAMEYGEQGIRVV 183 AVL +++ G I+N++S +T ++ Y+AAK GV M+ ALA E G + I V Sbjct: 121 SRAVLRGMMKAKHGRIINITSVVGSTGNAGQMNYAAAKAGVAGMSRALAREIGSRNITVN 180 Query: 184 ATAPGGTEAPPRRVPRNADGDSAQEQAWMQQAVQQVTSSTFFKRYATLEEQIAPILFLAS 243 APG D+ + +Q + + R E+ A + FLAS Sbjct: 181 CVAPGFI-------------DTDMTKTLSEQQISALLQQVPLGRLGVPEDIAAAVSFLAS 227 Query: 244 DEASYITGTVLPVAAG 259 +ASYITGT L V G Sbjct: 228 PQASYITGTTLHVNGG 243 >gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 246 Score = 70.1 bits (170), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 71/262 (27%), Positives = 117/262 (44%), Gaps = 33/262 (12%) Query: 13 KVAVVTGAAQGILRGVALGIAAEGGQVLLV------DRADFIDEVAAQAEAGRGSGFVAD 66 ++A+VTG G+ + + +AA G QV+ +++ + A R + D Sbjct: 3 RLALVTGGMGGLGEAICIKLAALGYQVVTTYSPSNTTAGEWLATMKASGYDFRA--YPCD 60 Query: 67 LETYAGAQAAMAQAIARYGRIDILINGVGGAIRMRPYDQFEAAQIDAEIRRSLMPTLYGC 126 + Y AQ +A G ID+L+N G R + + E DA + +L Sbjct: 61 VSDYDSAQQCVALIKKEIGEIDVLVNN-AGITRDMTFKKMEKTDWDAVMGTNLDSVFNMT 119 Query: 127 HAVLPYLLRQGSGTIVNVSS-NATRG-IRRVPYSAAKGGVNAMTTALAMEYGEQGIRVVA 184 V ++ +G G I+N+SS NA +G + YSAAK G++ T ALA+E + + V Sbjct: 120 KPVCDGMVERGWGRIINISSVNAQKGAFGQTNYSAAKAGMHGFTKALALEVARKAVTVNT 179 Query: 185 TAPG--GTE---APPRRVPRNADGDSAQEQAWMQQAVQQVTSSTFFKRYATLEEQIAPIL 239 +PG GT+ A P+ V + V Q+ R EE + Sbjct: 180 ISPGYIGTKMVTAIPQDVLDT-------------KIVPQIP----MGRLGKPEEVAGLVA 222 Query: 240 FLASDEASYITGTVLPVAAGDN 261 +LASDEA+++TG + + G + Sbjct: 223 YLASDEAAFVTGANIAINGGQH 244 >gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrogenase [Herminiimonas arsenicoxydans] Length = 264 Score = 66.2 bits (160), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 69/260 (26%), Positives = 116/260 (44%), Gaps = 19/260 (7%) Query: 12 GKVAVVTGAAQGILRGVALGIAAEGGQVLLVDRADFIDEVAAQAEAGRGSG-----FVAD 66 GK A++TG+ GI G+A +A +G ++L D + A QA + G AD Sbjct: 8 GKTALITGSTSGIGLGIARALAQQGAHIVLNGFGDANEIAALQAGLTQDYGVQSTYHPAD 67 Query: 67 LETYAGAQAAMAQAIARYGRIDILINGVGGAIRMRPYDQFEAAQIDAEIRRSLMPTLYGC 126 + A M A A++G +DIL+N G + + F + DA I +L + Sbjct: 68 MSRPQEIAAMMQFAAAKFGSVDILVNN-AGIQHVADIEDFPVEKWDAIIAINLSSAFHTT 126 Query: 127 HAVLPYLLRQGSGTIVNVSSNATRGI----RRVPYSAAKGGVNAMTTALAMEYGEQGIRV 182 LP + + G I+N++S G+ ++ Y AAK G+ ++ A+E + G+ Sbjct: 127 RLALPAMKEKNWGRIINIAS--AHGLVGSAQKSAYVAAKHGIVGLSKVTALENAQTGVTC 184 Query: 183 VATAPGGTEAP--PRRVP-RNADGDSAQEQAWMQQAVQQVTSSTFFKRYATLEEQIAPIL 239 A PG P ++V R A+ D + + A ++ S F T E+ A + Sbjct: 185 NAICPGWVLTPLVQKQVDVRAANEDVSNDDAKKGLLAEKQPSGEFV----TPEQLGALAV 240 Query: 240 FLASDEASYITGTVLPVAAG 259 FL S+ A+ + G + G Sbjct: 241 FLCSEAANQVRGAAWSMDGG 260 >gi|134093825|ref|YP_001098900.1| oxidoreductase [Herminiimonas arsenicoxydans] Length = 259 Score = 59.7 bits (143), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 65/245 (26%), Positives = 106/245 (43%), Gaps = 11/245 (4%) Query: 12 GKVAVVTGAAQGILRGVALGIAAEGGQVLLVDRADFIDEVAAQAEAGRGSGFVADLETYA 71 GK A+V GA++G+ RG A +AAEG V LV R + E A SG + + Sbjct: 7 GKTALVCGASRGLGRGCAEALAAEGVHVTLVARNLEVLEATAMDIRSSASGVITIVACDI 66 Query: 72 GAQAAMAQAIARYGRIDILINGVGGAIRMRPYDQFEAAQID---AEIRRSLMPTLYGCHA 128 AQA+ + DIL+ GG P F D A + +++ + A Sbjct: 67 TTAEGRAQALHICPQPDILVTNAGGP----PTGDFHDWTRDDWIAALDANMLTPIELIKA 122 Query: 129 VLPYLLRQGSGTIVNVSSNATRGIRRV--PYSAAKGGVNAMTTALAMEYGEQGIRVVATA 186 + ++ +G G I+N++S+A + V + A+ G+ LA + Q + + Sbjct: 123 TVDGMMARGFGRIINITSSAVKAPISVLGLSNGARSGLTGFVAGLARKTVAQNVTINNLL 182 Query: 187 PGGTEAPPRRVPRNADGDSAQEQAWMQQAVQQVTSSTFFKRYATLEEQIAPILFLASDEA 246 PG E + S + AV+++++ +R+ T +E A FL S A Sbjct: 183 PGPFETDRLHSIFSEAAKSGGKSVDEISAVRKLSNPA--RRFGTRQEFGATCAFLCSQHA 240 Query: 247 SYITG 251 YITG Sbjct: 241 GYITG 245 >gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 240 Score = 58.5 bits (140), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 82/199 (41%), Gaps = 16/199 (8%) Query: 63 FVADLETYAGAQAAMAQAIARYGRIDILINGVGGAIRMRPYDQFEAAQIDAEIRRSLMPT 122 F D+ YA Q + Q G IDIL+N G R Q I +L Sbjct: 52 FCWDVSDYAQCQEGIRQVELDVGPIDILVNN-AGITRDAVLHHMTPGQWIEVINTNLGSV 110 Query: 123 LYGCHAVLPYLLRQGSGTIVNVSS-NATRG-IRRVPYSAAKGGVNAMTTALAMEYGEQGI 180 V+ + + G I+N+SS N RG I + Y+AAK G+ T +LA+E + I Sbjct: 111 FNMSRNVIEGMRERNFGRIINISSVNGERGQIGQANYAAAKAGIFGFTKSLALESARKNI 170 Query: 181 RVVATAPGGTEAPPRRVPRNADGDSAQEQAWMQQAVQQVTSSTFFKRYATLEEQIAPILF 240 V A APG D+ A Q+ ++++ + T + ++F Sbjct: 171 TVNAIAPGYC-------------DTDMVSAIPQEVLEKIVTGIPVGHLGTGSDIARLVVF 217 Query: 241 LASDEASYITGTVLPVAAG 259 LA + + +ITG V G Sbjct: 218 LADNASGFITGATFDVNGG 236 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.133 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 447,893 Number of extensions: 16141 Number of successful extensions: 90 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 78 Number of HSP's successfully gapped: 11 Length of query: 262 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 182 Effective length of database: 736,747 Effective search space: 134087954 Effective search space used: 134087954 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)