BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1128.p
         (341 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094001|ref|YP_001099076.1| CDP-6-deoxy-delta-3,4-glucoseen...   127   7e-31
gi|134093902|ref|YP_001098977.1| putative flavohemoprotein [Herm...    59   3e-10

>gi|134094001|ref|YP_001099076.1| CDP-6-deoxy-delta-3,4-glucoseen
           reductase [Herminiimonas arsenicoxydans]
          Length = 342

 Score =  127 bits (319), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 155/327 (47%), Gaps = 9/327 (2%)

Query: 16  RIIDCGAKEKVLDAAFRQRINLPMDCSDGVCGTCKCRAESGQYDLGDDYIEEALNSEEAE 75
           R   C A E +L AA R  + LP  C +G CG+C+    SG    G  + E AL + +  
Sbjct: 12  RQFSCEADETILSAAIRAGVGLPYGCKNGACGSCRGMVLSGDVTHGA-HQERALPAADEA 70

Query: 76  AGMVLTCQMVPQSDCVIAVPVASTACKTGSAKFSGKVAAITAFGEAAFELVLEVGA-DAP 134
            G  L C   P  D VI         +    K   ++A +   G+    + L++ A +  
Sbjct: 71  KGFSLFCCARPHGDVVIEAREVLGLGEFPIKKLPSRIARLERVGDDVMSIALQLPASEKL 130

Query: 135 AFLPGQYVNIGVPGSGQQRAYSFSS-PSGAARMSFLIKNVPGGLMSAWL-AGASVGTALE 192
            +  GQY+   +   G++R+YS ++ P     ++  I+++PGGL +  + +       L 
Sbjct: 131 QYRAGQYIEFMLK-DGKRRSYSLANAPHVGEHVTLHIRHMPGGLFTDQVFSTMKERDILR 189

Query: 193 LTGPLGSFYLRPVT-RPVLMLAGGTGLAPFLSMLEELLRQGVSQPVHMIYGVTRDQDLVL 251
             GPLGSF+LR  + +P+++LA GTG AP  +++E+ +     +P+ + +G  R +DL +
Sbjct: 190 FEGPLGSFFLREDSDKPMVLLASGTGFAPIKAIVEQAVHIKSERPMTLYWGGRRPKDLYM 249

Query: 252 VERLEALAQRLPGFSFTTCVADPATA---HPRQGYVTQHMPAEVLHEGAVDVYLCGPPPM 308
               E  A+ +P F +   +++       + + G+V Q +  ++       VY CG P M
Sbjct: 250 HALCEEWARTIPNFRYVPVISNATQEDQWNGQTGFVHQVVMNDLPDLSNYQVYACGAPAM 309

Query: 309 VEAVQKHFQSQGITPASFHYEKFVTSQ 335
           V+A +  F +    P    Y    TS+
Sbjct: 310 VDAARTDFSASCNLPEEEFYADAFTSE 336


>gi|134093902|ref|YP_001098977.1| putative flavohemoprotein
           [Herminiimonas arsenicoxydans]
          Length = 397

 Score = 58.9 bits (141), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 88/216 (40%), Gaps = 24/216 (11%)

Query: 134 PAFLPGQYVNIGV---PGSGQQRAYSFSSPSGAARMSFLIKN------VPGGLMSAWLA- 183
           P F PGQYV++ V    G  Q R YS S       +   +K        P G++S WL  
Sbjct: 179 PEFQPGQYVSVAVFLPDGLRQLRQYSLSESPDHQHLRISVKREVAGAETPAGVVSNWLHD 238

Query: 184 GASVGTALELTGPLGSFYLRPVTR---PVLMLAGGTGLAPFLSMLEELLRQGVSQPVHMI 240
              VG+ L ++ P G F   P T    P+++L+ G G+ P +S L  + +  VS    +I
Sbjct: 239 NVVVGSILPVSMPAGDF--TPDTDGEDPIVLLSAGVGITPMISALNRIAK--VSPRRRVI 294

Query: 241 YGVTRDQDLVLVER--LEALAQRLPGFSFTTCVADPATAHPRQGYVTQHMPAEVLHEGAV 298
           +            R  +      +P     T   +    H  +  +   M  + L +  V
Sbjct: 295 FAHAARNAHHHPHRADIAKAVASMPNLHSVTFYEE--AEHDDETSLAGRMELQKLPQWDV 352

Query: 299 D---VYLCGPPPMVEAVQKHFQSQGITPASFHYEKF 331
               VY+CGP P ++A      +QG+     H E F
Sbjct: 353 KKSQVYMCGPLPFMQAQWADLLAQGVPAQHLHREVF 388


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 675,403
Number of extensions: 28935
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 2
Length of query: 341
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 259
Effective length of database: 730,157
Effective search space: 189110663
Effective search space used: 189110663
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)