BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1123.p (317 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093979|ref|YP_001099054.1| LysR family transcriptional reg... 146 2e-36 gi|134093581|ref|YP_001098656.1| LysR family transcriptional reg... 76 3e-15 gi|134095507|ref|YP_001100582.1| putative transcriptional regula... 75 3e-15 gi|134095242|ref|YP_001100317.1| putative transcriptional regula... 72 3e-14 gi|134095322|ref|YP_001100397.1| methionine biosynthesis [Hermin... 67 8e-13 >gi|134093979|ref|YP_001099054.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 297 Score = 146 bits (368), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 93/249 (37%), Positives = 135/249 (54%), Gaps = 3/249 (1%) Query: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLILRNSRPLRLTEA 60 +++RQL+YFV VA +F RA+ +LH+ QPPLS+ IQ LE LGVQL R SR + LT A Sbjct: 3 IELRQLRYFVTVAEEMHFGRAAIRLHMTQPPLSQAIQSLEAMLGVQLFRRTSRSVALTPA 62 Query: 61 GRMFYEQALQILNRLDQLKHATQQIGLNQRQTLSIGFVASTLYGGLPMLVRKLRQHYPEV 120 G +A +IL + L +++ LS+ FV++ Y LP +R+ R+ YP V Sbjct: 63 GSALLPEAQRILQQTAALPDLMRRVTSGASGRLSLAFVSTADYSVLPPFLREFRESYPGV 122 Query: 121 DIQLLELTSMQQFAALKSGRIDIGFGRIRGNDAT---VARTVLREERLVLAIPPAFPLAT 177 +I L E T+ Q L GRID+G D + + E L+LA P Sbjct: 123 EIDLREATTDVQLDDLMQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLILAAPKGLKALK 182 Query: 178 SQQRVSLKELHGQKLIVYPKEPRPSFADHILSLLNDQDIQPAEVHEVREIQTALGLVAAE 237 +Q V+L+ L LI++P+ P+F D ILS D + P E ++QT +GLV+A Sbjct: 183 GKQSVALQSLAELPLIIFPRRIAPAFHDAILSCYRDAGLTPHIGQEAIQMQTIIGLVSAG 242 Query: 238 SGLCLIPAS 246 G+ L+P S Sbjct: 243 MGIALVPQS 251 >gi|134093581|ref|YP_001098656.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 315 Score = 75.9 bits (185), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 67/260 (25%), Positives = 119/260 (45%), Gaps = 11/260 (4%) Query: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLILRNSRPLRLTEA 60 M + +LKY VAVA ++F A+E H+AQP LS I+ LE+ELGV L R + +T Sbjct: 1 MTLTELKYIVAVAREKHFGHAAEACHVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPL 60 Query: 61 GRMFYEQALQILNRLDQLKHATQQIGLNQRQTLSIGFVASTLYGGLPMLVRKLRQHYPEV 120 G QA ++L + +K +Q +G + + LP LV+ + + P++ Sbjct: 61 GVQIVAQAERVLEQTAAIKEIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKAMIERVPQM 120 Query: 121 DIQLLELTSMQQFAALKSGRIDIGFGRIRGNDATVARTVLREERLVLAIPPAFPLATSQQ 180 + L E +++ L+ G ID + D + + +E V+A+P P A + Sbjct: 121 PLVLQENFTVKLLEQLRQGEIDAAIVALPIPDQGLLVQPVYDEPFVVAVPKHHPWA-ERS 179 Query: 181 RVSLKELHGQKLIVYPKEPRPSFADHIL------SLLNDQDIQPAEVHEVREIQTALGLV 234 V+ L + +++ F D +L S + A E ++T +V Sbjct: 180 SVTTDNLKSETMLLLGN--GHCFRDQVLEVCPEMSRFSTSGDGIARTFEGSSLETIRHMV 237 Query: 235 AAESGLCLIPASARLRNDLH 254 A+ G+ ++P ++ D+H Sbjct: 238 ASGIGITVLPQAS--VPDMH 255 >gi|134095507|ref|YP_001100582.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 287 Score = 75.5 bits (184), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 60/179 (33%), Positives = 94/179 (52%), Gaps = 25/179 (13%) Query: 6 LKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLILRNSRPLRLTEAGRMFY 65 +K FVAV +FT A +L I++ +S+ + +LE+ LG +L+ R +R L LTE+G +Y Sbjct: 1 MKTFVAVVEAESFTAAGARLDISKALVSKYVGILEDHLGTRLLNRTTRRLSLTESGLAYY 60 Query: 66 EQALQILNRLDQLKHATQQIGLNQRQTLSIGFVASTLYGGL---PMLVRKLRQHYPEVDI 122 E+ LQIL +D+ + Q R TL + S +G + P+L +R+ YPEV + Sbjct: 61 ERCLQILADVDEAEQVAAQSAAMPRGTLKVAMPVS--FGTVRIAPLLTEYMRR-YPEVRL 117 Query: 123 QLLELTSMQQFAALKSGRIDI---GFG-RIR-GN---DATVARTVLREERLVLAIPPAF 173 + AL R+D+ G+ IR GN +AR L +R+VL PA+ Sbjct: 118 DI----------ALADRRVDLIEDGYDLAIRVGNLPESGLIARK-LATDRIVLCASPAY 165 >gi|134095242|ref|YP_001100317.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 254 Score = 72.0 bits (175), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 93/204 (45%), Gaps = 1/204 (0%) Query: 43 LGVQLILRNSRPLRLTEAGRMFYEQALQILNRLDQLKHATQQIGLNQRQTLSIGFVASTL 102 +GV L RN R LT AG +F + ++ L+Q + + + R +L I + Sbjct: 1 MGVVLFDRNRRGTVLTAAGAVFLQDVRRLFTVLEQARENAKAVASGLRGSLRIAVSDGAI 60 Query: 103 YGGLPMLVRKLRQHYPEVDIQLLELTSMQQFAALKSGRIDIGFGRIRGNDATVARTVLRE 162 L + + R PE++I+L E+ +Q L+SG IGF +A + Sbjct: 61 DPRLSAFLARCRAEEPEIEIRLSEVPLAEQVRGLRSGDFMIGFAHTADVGDGIAAEAIWH 120 Query: 163 ERLVLAIPPAFPLATSQQRVSLKELHGQKLIVYPKEPRPSFADHILSLLNDQDIQPAEVH 222 + LV+A+P L T ++ V L+EL G L++ + + + LLN + + V Sbjct: 121 DPLVIAVPARHSLLTYKE-VPLQELQGHPLVLCDPQVCEGYCRELKRLLNTLEHKLNVVE 179 Query: 223 EVREIQTALGLVAAESGLCLIPAS 246 EV + L LV A G+ + A+ Sbjct: 180 EVSSLDMMLTLVGAGYGIGFMTAT 203 >gi|134095322|ref|YP_001100397.1| methionine biosynthesis [Herminiimonas arsenicoxydans] Length = 306 Score = 67.4 bits (163), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 66/251 (26%), Positives = 110/251 (43%), Gaps = 12/251 (4%) Query: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLILRNSRPLRLTEA 60 +++R LK +A+ N RA+ L++ Q LS Q++ LE+ G QL R S P+R T A Sbjct: 5 LELRHLKTLIALREAGNLLRAASLLNVTQSALSHQLKQLEDHHGTQLFERKSVPVRFTPA 64 Query: 61 GRMFYEQALQILNRLDQLKHATQQIGLNQRQTLSIGFVASTLYGGLPMLVRKLRQHYPEV 120 G + A +L ++ + + ++ L I T + L + R +PEV Sbjct: 65 GERLLKLADTVLPQVAETERDLVRLAQGVAGQLRIAVECHTCFDWLMPAMDVFRGRWPEV 124 Query: 121 DIQLLELTSMQQFAALKSGRIDIGFGRIRGNDATVARTVLREERLVLAIPPAFPLATSQQ 180 ++ ++ L R D+ D TV L +V + PLA + Sbjct: 125 ELDIVSGFQADPVGLLYEHRADVAIVAEIDPDETVDYHALFRFEIVALVAHDHPLADKEF 184 Query: 181 RVSLKELHGQKLIVYPKEPRPSFADHILSLLNDQDIQPAEVHEVR---EIQTA-LGLVAA 236 V+ ++ G LI YP D +L ++ Q ++PA + R E+ A L LVA+ Sbjct: 185 LVA-EDFIGDTLITYP------VPDDMLDVVR-QVLKPAGIKVERRTTELTVAMLQLVAS 236 Query: 237 ESGLCLIPASA 247 G+ +P A Sbjct: 237 RRGIATLPVWA 247 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 537,737 Number of extensions: 19981 Number of successful extensions: 100 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 97 Number of HSP's successfully gapped: 13 Length of query: 317 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 235 Effective length of database: 730,157 Effective search space: 171586895 Effective search space used: 171586895 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)