BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1121.p
         (259 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094607|ref|YP_001099682.1| putative hydrolase (EstB) [Herm...    64   1e-11

>gi|134094607|ref|YP_001099682.1| putative hydrolase (EstB)
           [Herminiimonas arsenicoxydans]
          Length = 305

 Score = 63.5 bits (153), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 111/281 (39%), Gaps = 58/281 (20%)

Query: 1   MPFATLNGIKLHYQLDGDAALPVLVLSNSLGTSLAMWEPQIAE--LSQHFRVLRYDTRGH 58
           MP A +N + + Y   GD   P L+L   LG     W        + + F ++R+D R +
Sbjct: 1   MPIAKVNDLDIWYDTQGDPGNPPLLLIVGLGMQSVSWPQSFCNGLVERGFYLIRFDNRDN 60

Query: 59  GQS----------------------EVTPGPYTIAQLGSDVIALLDQLEIAQAHFCGLSM 96
           G S                      ++  G Y +  + +D I LLD L+I +AH  G SM
Sbjct: 61  GLSTKLHHLGKPNTLLAVVKMALRMKLAAG-YKLDDMAADAIGLLDALDIRKAHIVGASM 119

Query: 97  GGSTFMWLAVHHPERVNKL--ILCNTG-----------AKIGTAEAWNSRIDTVLRDGLP 143
           GG     +A  HPERV  L  I+  +G            K+  + A + +    L +   
Sbjct: 120 GGMIAQIVAARHPERVLSLTSIMSTSGRRGLPGPTRAARKVLFSTAPDPKNHVALTEHFV 179

Query: 144 AIAPAVVS-RWLTPEYA--EHNPQQVQ------ALTAMLLATPAEGYAGACAAVRDNDLR 194
            +   + S  + TP+    E   + ++      A T  LLA  A G           D  
Sbjct: 180 NLMQVIGSPAYPTPKEVLQERVERTIKRSLEPIATTRQLLAIGASG-----------DRV 228

Query: 195 EAIAGIRAPTLVIAGSGDLPTPPADAQFMRATIPGALYVEF 235
           + +  IR PTLVI G  D   P    +   + IP A+ +E 
Sbjct: 229 DLLKSIRVPTLVIHGLEDPLVPIDGGRETASLIPNAVMLEI 269


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 538,326
Number of extensions: 22304
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 2
Length of query: 259
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 179
Effective length of database: 736,747
Effective search space: 131877713
Effective search space used: 131877713
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)