BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1100.p (307 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093979|ref|YP_001099054.1| LysR family transcriptional reg... 69 4e-13 gi|134093581|ref|YP_001098656.1| LysR family transcriptional reg... 67 2e-12 gi|134093619|ref|YP_001098694.1| putative transcriptional regula... 64 1e-11 gi|134095306|ref|YP_001100381.1| LysR family transcriptional reg... 59 3e-10 >gi|134093979|ref|YP_001099054.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 297 Score = 68.6 bits (166), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 84/299 (28%), Positives = 126/299 (42%), Gaps = 29/299 (9%) Query: 1 MTLKQLEAFYWAATCANFGIASERLHLSISSLSKRISELELSLGISLFDRSGHRAMLSEA 60 + L+QL F A +FG A+ RLH++ LS+ I LE LG+ LF R+ L+ A Sbjct: 3 IELRQLRYFVTVAEEMHFGRAAIRLHMTQPPLSQAIQSLEAMLGVQLFRRTSRSVALTPA 62 Query: 61 GQALLPQAQALLDNAARV-----RATFAPSVGLVGRCAFGVGELSALTWLPQFMVQVRAR 115 G ALLP+AQ +L A + R T G GR + + + LP F+ + R Sbjct: 63 GSALLPEAQRILQQTAALPDLMRRVT----SGASGRLSLAFVSTADYSVLPPFLREFRES 118 Query: 116 HPKLVL---EPYVDV--GAVLESRVAKGELDFAIIAGRSSHYDILSQPLSQEQFIWVAAP 170 +P + + E DV +++ R+ G L + D L P+ E I A Sbjct: 119 YPGVEIDLREATTDVQLDDLMQGRIDVGLLIPPLPDKAKLQLDYL--PVLSEPLILAAPK 176 Query: 171 ALAVSDDSQRVYSAVDLLQAGQPMIVLPPSAGSTRLIDDWLL----EHGITAVERINCNN 226 L Q V A+ L A P+I+ P D +L + G+T Sbjct: 177 GLKALKGKQSV--ALQSL-AELPLIIFPRRIAPA--FHDAILSCYRDAGLTPHIGQEAIQ 231 Query: 227 WGAIAGMLIASVGIGILPAGWSQKLLDQNLLRPLAGGELPTSLTYS-FQWRRGDNRPLL 284 I G++ A +GI ++P S +PLA T L + WRR + P+L Sbjct: 232 MQTIIGLVSAGMGIALVPQSVSNLKRPGVDYKPLANK---TPLVETGLAWRRDNASPVL 287 >gi|134093581|ref|YP_001098656.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 315 Score = 66.6 bits (161), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 2/171 (1%) Query: 1 MTLKQLEAFYWAATCANFGIASERLHLSISSLSKRISELELSLGISLFDRSGHRAMLSEA 60 MTL +L+ A +FG A+E H++ +LS I +LE LG++LF+R G ++ Sbjct: 1 MTLTELKYIVAVAREKHFGHAAEACHVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPL 60 Query: 61 GQALLPQAQALLDNAARVRATFAPSVG-LVGRCAFGVGELSALTWLPQFMVQVRARHPKL 119 G ++ QA+ +L+ A ++ + LVG G+ A LP + + R P++ Sbjct: 61 GVQIVAQAERVLEQTAAIKEIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKAMIERVPQM 120 Query: 120 VLEPYVDVGAVLESRVAKGELDFAIIAGRSSHYDILSQPLSQEQFIWVAAP 170 L + L ++ +GE+D AI+A +L QP+ E F+ VA P Sbjct: 121 PLVLQENFTVKLLEQLRQGEIDAAIVALPIPDQGLLVQPVYDEPFV-VAVP 170 >gi|134093619|ref|YP_001098694.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 367 Score = 63.5 bits (153), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 82/170 (48%), Gaps = 2/170 (1%) Query: 2 TLKQLEAFYWAATCANFGIASERLHLSISSLSKRISELELSLGISLFDRSGHRAMLSEAG 61 TL+QL+ F A +F A+E LHL+ ++S ++ +LE G++LF++ G + L+ G Sbjct: 49 TLRQLKVFETVARLLSFSRAAEELHLTQPAVSTQVKKLEDHAGLALFEQLGKKIYLTPGG 108 Query: 62 QALLPQAQALLDNAARVRATFAPSVGLVGRCAFGVGELSALTW-LPQFMVQVRARHPKLV 120 LL ++ ++ G+ G V +SA + P+ +V+ H + Sbjct: 109 TELLHYSRTIIQQFQEAEDAMTQFKGITG-GKLNVAVISAGDYFFPRLLVEFARSHQGVT 167 Query: 121 LEPYVDVGAVLESRVAKGELDFAIIAGRSSHYDILSQPLSQEQFIWVAAP 170 L V L +++A D AI+ + D +++P + ++ VAAP Sbjct: 168 LNLSVHNREGLLNQLANNLTDLAIMVRPPTDMDTINEPFAPHPYVIVAAP 217 >gi|134095306|ref|YP_001100381.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 294 Score = 58.9 bits (141), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 56/251 (22%), Positives = 103/251 (41%), Gaps = 7/251 (2%) Query: 3 LKQLEAFYWAATCANFGIASERLHLSISSLSKRISELELSLGISLFDRSGHRAMLSEAGQ 62 L L F + + +ER HLS++S S RI +E LGI L R + G+ Sbjct: 5 LTDLTLFLHSVETGSITAGAERSHLSLASASARIRGMEEMLGIPLLIRGQRGVEATPVGK 64 Query: 63 ALLPQAQALLDNAARVRATFAP-SVGLVGRCAFGVGELSALTWLPQFMVQVRARHPKLVL 121 AL+ A+ L R+R + + GL G +S +LP+ + A HP + + Sbjct: 65 ALVHHARIALRQQERMRGELSEYAQGLKGHVRIMSNTVSLTEFLPEALSNFLATHPNVNI 124 Query: 122 EPYVDVGAVLESRVAKGELDFAIIAGRSSHYDILSQPLSQEQFIWVAAPALAVSDDSQRV 181 + + + S + +G +D I++ + P ++ V A D V Sbjct: 125 DLEERLSFEIVSALTEGTIDIGILSDSVDFSGFETFPFHDDRLTLVVA-----RDHPLSV 179 Query: 182 YSAVDLLQA-GQPMIVLPPSAGSTRLIDDWLLEHGITAVERINCNNWGAIAGMLIASVGI 240 S++ + I L + + + + G R+ ++ A+ M+ +VGI Sbjct: 180 RSSIHFAETLDYDFIGLQEGSALQEYLSEQAAKMGRRFKYRVRLRSFDAVCRMIERNVGI 239 Query: 241 GILPAGWSQKL 251 G++P + +L Sbjct: 240 GVVPEAAANRL 250 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.136 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 501,044 Number of extensions: 18691 Number of successful extensions: 95 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 92 Number of HSP's successfully gapped: 4 Length of query: 307 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 226 Effective length of database: 733,452 Effective search space: 165760152 Effective search space used: 165760152 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)