BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1094.p (306 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094687|ref|YP_001099762.1| putative DNA-binding transcript... 87 1e-18 gi|134093619|ref|YP_001098694.1| putative transcriptional regula... 78 5e-16 gi|134095567|ref|YP_001100642.1| transcriptional regulator CysB-... 75 6e-15 gi|134094079|ref|YP_001099154.1| transcriptional regulator Cbl [... 67 2e-12 gi|134093979|ref|YP_001099054.1| LysR family transcriptional reg... 62 3e-11 >gi|134094687|ref|YP_001099762.1| putative DNA-binding transcriptional regulatory transcription regulator protein [Herminiimonas arsenicoxydans] Length = 305 Score = 87.0 bits (214), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 108/230 (46%) Query: 17 FLEVVRRGSITEAAITLNVASSAISRQISRLEDALDTPLFERISRGMRPNAAGELLAAHA 76 F++V R GSIT A N+A +A S++IS LE L T L R + G+ AG HA Sbjct: 14 FVDVARTGSITRGAQQANLALAAASKRISDLEAHLGTVLLYRHANGVTLTDAGNACFQHA 73 Query: 77 LRMQLEAERVGNELAALKGLRRGEVKLACTEGFALEFVPHAIAQFRERHRGIRFHLSVGN 136 L + + ER+ ++ RG+V++ +F+P + F + H G+R + N Sbjct: 74 LGIIQDVERMSGVMSDYASGIRGQVRIWANTSAITQFLPDDLHAFMQAHAGVRIDIEERN 133 Query: 137 AKSVAQLVREGTVDLGLTFMLAPDPDIKVEFSQKAPIMAVMHPDHVLAGRKRVSLSELAQ 196 + V +RE D+G+ P I V +K + V+ +H LA K+VSLS+ Sbjct: 134 SGDVVAGIRENRTDIGIFADPTPAEGIAVFTYRKQKLGLVVPKNHPLAAHKQVSLSDALD 193 Query: 197 YPLGMPKKNITMRRLIDACCSRSNVVLEPALSADSISALLSFVMSGNGVG 246 Y + ++ + A CSR L+ S A+ V +G G+G Sbjct: 194 YDFVSLAEATSLTERLHAACSRLQKPLKLRAQVRSFDAVCRMVKAGVGIG 243 >gi|134093619|ref|YP_001098694.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 367 Score = 78.2 bits (191), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 69/292 (23%), Positives = 128/292 (43%), Gaps = 4/292 (1%) Query: 14 VRYFLEVVRRGSITEAAITLNVASSAISRQISRLEDALDTPLFERISRGMRPNAAGELLA 73 ++ F V R S + AA L++ A+S Q+ +LED LFE++ + + G L Sbjct: 53 LKVFETVARLLSFSRAAEELHLTQPAVSTQVKKLEDHAGLALFEQLGKKIYLTPGGTELL 112 Query: 74 AHALRMQLEAERVGNELAALKGLRRGEVKLACTEGFALEFVPHAIAQFRERHRGIRFHLS 133 ++ + + + + + KG+ G++ +A F P + +F H+G+ +LS Sbjct: 113 HYSRTIIQQFQEAEDAMTQFKGITGGKLNVAVISA-GDYFFPRLLVEFARSHQGVTLNLS 171 Query: 134 VGNAKSVAQLVREGTVDLGLTFMLAPDPDIKVEFSQKAPIMAVMHPDHVLAGRKRVSLSE 193 V N + + + DL + D D E P + V PDH L +K + +S Sbjct: 172 VHNREGLLNQLANNLTDLAIMVRPPTDMDTINEPFAPHPYVIVAAPDHHLVSKKNIPMST 231 Query: 194 LAQYPLGMPKK-NITMRRLIDACCSRSNVVLEPALSADSISALLSFVMSGNGVGFSAQIP 252 L P + +K + T + D SR + L A+ S + V++G G+ F + Sbjct: 232 LIHEPFVVREKGSDTWHSMEDGFGSRID-DLNIAMEIKSTETIKQAVIAGMGISFLSAHT 290 Query: 253 IREYLRTRKLVAVPIKDKDMNALYLEIQSLSGRTLPQAARSFLNTLIDRASE 304 I L+ L + ++ + + + + R LP A++F N L++ E Sbjct: 291 ISMELQAGSLTVLDVEGFPVMLNWYVVHRKNKR-LPPVAQAFRNFLLNEGPE 341 >gi|134095567|ref|YP_001100642.1| transcriptional regulator CysB-like protein [Herminiimonas arsenicoxydans] Length = 313 Score = 74.7 bits (182), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 82/298 (27%), Positives = 134/298 (44%), Gaps = 25/298 (8%) Query: 14 VRYFLEVVRRG-SITEAAITLNVASSAISRQISRLEDALDTPLFERIS---RGMRPNAAG 69 +R+ E VR+ ++TEAA L + +S+ I LE+ L +F R RG+ Sbjct: 6 LRFVREAVRQNFNLTEAAKALFTSQPGVSKAIIELEEELGVDIFSRHGKRIRGLTEPGRA 65 Query: 70 ELLAAHALRMQLEA-ERVGNELAALKGLRRGEVKLACTEGFALEFVPHAIAQFRERHRGI 128 L + A+ +++E +R+GNE AA G +A T A +P + F ++ + Sbjct: 66 VLKSVEAIMLEIEGLKRIGNEFAAHDS---GSFTIATTHTQARYSLPKVVQAFTQKFPKV 122 Query: 129 RFHLSVGNAKSVAQLVREGTVDLGLTFMLAPDPDIKVEFSQKAPIMAVMHP-DHVLAGRK 187 R L GN K +A++V DL + + D + ++ P DH L K Sbjct: 123 RLSLLQGNPKQIAEMVLMDQADLAIATEAIANMDGLISLPCYQWEHQIVLPLDHPLLKSK 182 Query: 188 RVSLSELAQYPLGMPKKNITMRRLIDACCSRSNV---VLEPALSADSISALLSFVMSGNG 244 ++L ELA YP+ R ID + N+ +L A+ AD I ++V G G Sbjct: 183 SITLEELAAYPIITYDSAFAGRNKIDHAFNLRNLKPDILLEAIDADVIK---TYVELGMG 239 Query: 245 VGFSAQIPIREYLRTRKLVAVPIKDKDMNALYLEIQSLSGRTLPQAA--RSFLNTLID 300 +G A + + R + L A+P A +L ++S L Q A RS++ T I+ Sbjct: 240 IGIIAGMAF-DTERDKNLRAIP-------AGHLFGTNVSRVALKQGAYLRSYVFTFIE 289 >gi|134094079|ref|YP_001099154.1| transcriptional regulator Cbl [Herminiimonas arsenicoxydans] Length = 308 Score = 66.6 bits (161), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 107/248 (43%), Gaps = 9/248 (3%) Query: 14 VRYFLEVVRRG-SITEAAITLNVASSAISRQISRLEDALDTPLFERISR---GMRPNAAG 69 +R E R G ++TE A L + +SRQI LE+ L +FER + G+ G Sbjct: 6 LRSIRETARCGFNLTEVANVLFTSQPGVSRQIRELEEELGVDIFERNGKRLTGLTDPGRG 65 Query: 70 ELLAAHALRMQLEAERVGNELAALKGLRRGEVKLACTEGFALEFVPHAIAQFRERHRGIR 129 L R+ LEAE + G G + +A T A +P + FR +R Sbjct: 66 ILTIID--RLLLEAENLQRASQEYAGQEIGTLAVATTHTQARYMLPEVVQAFRAEFPKVR 123 Query: 130 FHLSVGNAKSVAQLVREGTVDLGL-TFMLAPDPDIKVEFSQKAPIMAVMHPD-HVLAGRK 187 L + + +A+ V G D+G+ T L+ D+ V F A++ P H L Sbjct: 124 IALQQSSPEHIAEWVLSGKADIGIATEGLSQFEDL-VSFPCYRWHHAIVVPQGHALLSHA 182 Query: 188 RVSLSELAQYPLGMPKKNITMRRLIDACCSRSNVVLEPALSADSISALLSFVMSGNGVGF 247 V+L LA+YPL T R ID +++ + L+A + +V G GVG Sbjct: 183 PVTLEALAKYPLITYDLGFTGRGHIDDAFKSADIAPDIVLTAMDSDVIQQYVSLGLGVGI 242 Query: 248 SAQIPIRE 255 A + ++ Sbjct: 243 VASMAVQH 250 >gi|134093979|ref|YP_001099054.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 297 Score = 62.0 bits (149), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/257 (24%), Positives = 108/257 (42%), Gaps = 24/257 (9%) Query: 9 LEETAVRYFLEVVRRGSITEAAITLNVASSAISRQISRLEDALDTPLFERISRGMRPNAA 68 +E +RYF+ V AAI L++ +S+ I LE L LF R SR + A Sbjct: 3 IELRQLRYFVTVAEEMHFGRAAIRLHMTQPPLSQAIQSLEAMLGVQLFRRTSRSVALTPA 62 Query: 69 GELLAAHALRMQLEAERVGNELAALKGLRR-------GEVKLACTEGFALEFVPHAIAQF 121 G L EA+R+ + AAL L R G + LA +P + +F Sbjct: 63 GSALLP-------EAQRILQQTAALPDLMRRVTSGASGRLSLAFVSTADYSVLPPFLREF 115 Query: 122 RERHRGIRFHLSVGNAKSVAQLVREGTVDLGLTFMLAPDPD---IKVEF---SQKAPIMA 175 RE + G+ L + +G +D+GL ++ P PD +++++ + I+A Sbjct: 116 RESYPGVEIDLREATTDVQLDDLMQGRIDVGL--LIPPLPDKAKLQLDYLPVLSEPLILA 173 Query: 176 VMHPDHVLAGRKRVSLSELAQYPLGMPKKNI--TMRRLIDACCSRSNVVLEPALSADSIS 233 L G++ V+L LA+ PL + + I I +C + + A + Sbjct: 174 APKGLKALKGKQSVALQSLAELPLIIFPRRIAPAFHDAILSCYRDAGLTPHIGQEAIQMQ 233 Query: 234 ALLSFVMSGNGVGFSAQ 250 ++ V +G G+ Q Sbjct: 234 TIIGLVSAGMGIALVPQ 250 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.134 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 488,284 Number of extensions: 18027 Number of successful extensions: 85 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 85 Number of HSP's successfully gapped: 10 Length of query: 306 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 225 Effective length of database: 733,452 Effective search space: 165026700 Effective search space used: 165026700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)