BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1093.p (401 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094710|ref|YP_001099785.1| putative transport protein [Her... 76 3e-15 gi|134094872|ref|YP_001099947.1| putative nitrite extrusion prot... 65 5e-12 gi|134093380|ref|YP_001098455.1| putative transporter [Herminiim... 64 1e-11 gi|134095305|ref|YP_001100380.1| putative permease [Herminiimona... 64 2e-11 >gi|134094710|ref|YP_001099785.1| putative transport protein [Herminiimonas arsenicoxydans] Length = 435 Score = 75.9 bits (185), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 73/295 (24%), Positives = 126/295 (42%), Gaps = 34/295 (11%) Query: 3 SAVQTRIYKYAVLALL---YLGWCISYIDRAAITFAATHIASEFHLKPSDLGLLLSSFFL 59 ++++ R Y L LL ++ + +Y+DR + FA + ++ + GL FF+ Sbjct: 13 ASLENRTYAKVTLRLLPFLFICYVAAYLDRVNVGFAKLSMLNDLQFSETVYGLGAGIFFI 72 Query: 60 GYSLLQLPGGWLADRFGSRPVIVISILMWSLFTGLTGMAWSITSLVVIRFFFGIGEGSFP 119 GY L ++P + R G+R I ++ WS+ + T S T VIRF G+ E F Sbjct: 73 GYFLFEVPSNIIMHRVGARVWIARIMITWSVLSAATMFVTSPTMFYVIRFLLGVAEAGFF 132 Query: 120 AASIKGVAEHFDKGERPKMSSVLMSSNYIGSMLAPVIIAPL----ILHF-------GWRN 168 + + F R +M+++ M IG +A V+ PL + HF GW+ Sbjct: 133 PGIVLYLTYWFPSSRRGRMNALFM----IGIPIAGVVGGPLSGWIMNHFAGANGWYGWQW 188 Query: 169 VFHYIGIVGIIFAV------------AYWLCVRP---LSER-TDGGKRPVNSKTISELMR 212 +F I ++ V + WL L E G S +++ + Sbjct: 189 LFLLEAIPSLLLGVITLFYLPNTIRASTWLSENEKQVLEENIAQDGSDTSKSHSVAGVFT 248 Query: 213 LPLMWQLVAVWFGLSVVNKGLDSWMPTYLMTVRGLDLKAVGLLLPLPYVMAGIST 267 P +W + A++F + G+ ++PT + D VGLL +PY I+T Sbjct: 249 NPKVWLMAAIYFCCMMGLYGISFYLPTLVKASGVKDALDVGLLTAIPYTCGVIAT 303 >gi|134094872|ref|YP_001099947.1| putative nitrite extrusion protein [Herminiimonas arsenicoxydans] Length = 412 Score = 65.1 bits (157), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 67/247 (27%), Positives = 115/247 (46%), Gaps = 20/247 (8%) Query: 39 IASEFHLKPSDLGLLLSSFFLGYSLLQLPGGWLADRFGSRPVIVISILMWSLFTGLTGMA 98 + ++ L ++ GLL + L SL+++P G DR+G R IV +LM S + ++ Sbjct: 36 VKTQLGLNETEFGLLTAMPVLSGSLIRVPLGIWTDRYGGR--IVFFLLMLSSVVPIYMIS 93 Query: 99 WSIT--SLVVIRFFFGIGEGSFPAASIKGVAEHFDKGERPKMSSVLMSSNYIGSMLAPVI 156 ++ +V+ F G+ GSF + VA F K ER ++ + + GS L + Sbjct: 94 YATEYWHFLVLGLFVGLAGGSFSVGT-PYVARWFQK-ERRGLAMGIFGAGNSGSALTKFV 151 Query: 157 IAPLILHFGWRNVFHYIGIVGIIFAVAYWLCVRPLSERTDGGKRPVNSKTISELMRL--- 213 +I +GW+ + + + ++ A+ +W TD + + SE M++ Sbjct: 152 APAIIAAYGWQMLPNVYALGMLVTALLFWFF-----SYTDKSHQMPAGVSFSEQMKVLKD 206 Query: 214 PLMW---QLVAVWFGLSVVNKGLDSWMPTYLMTVRGLDLKAVGLLLPLPYVMAGISTAIG 270 P +W Q +V FG V GL WM Y +T G D++ LL + G+ A+G Sbjct: 207 PRVWRYCQYYSVVFGGYV---GLALWMTKYYVTEYGFDMQLAALLAACFSLPGGVLRALG 263 Query: 271 GWLMMRF 277 GW+ RF Sbjct: 264 GWISDRF 270 >gi|134093380|ref|YP_001098455.1| putative transporter [Herminiimonas arsenicoxydans] Length = 460 Score = 63.9 bits (154), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 94/207 (45%), Gaps = 8/207 (3%) Query: 10 YKYAVLALLYLGWCISYIDRAAITFAATHIASEFHLKPSDLGLLLSSFFLGYSLLQLPGG 69 Y+ ++ ++ W +D +TF I +EF L + GLL SS FLG L G Sbjct: 25 YQRSLFGIIATAWFFDSMDLGIMTFVLGSIKAEFGLSTAQAGLLASSSFLGMFLGAAIAG 84 Query: 70 WLADRFGSRPVIVISILMWSLFTGLTGMAWSITSLVVIRFFFGIGEG-SFPAASIKGVAE 128 LAD++G +PV S++ W + + G A + L++ R G G G FP + V+E Sbjct: 85 MLADKYGRKPVFQWSMVFWGVGSLACGFAQDVDQLMIFRVILGFGMGMEFPIG-LSMVSE 143 Query: 129 HFDKGERPKMSSVLMSSNYIGSMLAPVIIAPLILHFGWRNVFHYIGI-VGIIFAVAYWLC 187 R K ++L +G + A ++ + GWR +F + + +F + ++ Sbjct: 144 IVPAKSRGKYVAILEGFWPLGFIAAGILAYLTLPLIGWRGIFIALSVPAAFVFVIRRYV- 202 Query: 188 VRPLSER--TDGGKRPVNSKTISELMR 212 P S R + G+ K IS + + Sbjct: 203 --PESPRWLEEVGRNEEAEKVISTMEK 227 >gi|134095305|ref|YP_001100380.1| putative permease [Herminiimonas arsenicoxydans] Length = 450 Score = 63.5 bits (153), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 89/387 (22%), Positives = 169/387 (43%), Gaps = 45/387 (11%) Query: 12 YAVLALLYLGWCISYIDRAAITFAATHIASEFHLKPSDLGLLLSSFFLGYSLLQLPGGWL 71 + ++ L++ + ++Y+DR +I+FA + ++ + GL FF+GYSL ++P L Sbjct: 31 WRLIPFLFICYIVAYLDRTSISFAQMQMQNDLGFSAAIYGLGAGIFFIGYSLFEVPSNML 90 Query: 72 ADRFGSRPVIVISILMWSLFTGLTGMAWSITSL--VVIRFFFGIGEGSFPAASIKGVAEH 129 R G+R ++ +++W + TGM + T + V+RF G+ E F I + + Sbjct: 91 MQRIGARKTLLRIMVLWGIVA--TGMMFVTTPMQFYVMRFLLGVFEAGFFPGVIYFLTKW 148 Query: 130 FDKGERPKMSSVLMSSNYIGSMLAPVIIAPLILHF-------GWRNVFHYIGIVGIIFAV 182 + R + S+ M I +L I + GW+ +F G+ I+ + Sbjct: 149 YPGSRRGAVLSMFMLGMPISGVLGGPIAGWALNSLDGVNGWEGWQWLFFIEGLPAILLGL 208 Query: 183 -AYW-LCVRP-----LSERT-----------DGGKRPVNSKTISELMRLPLMWQLVAVWF 224 YW LC P L+ER P + ++ ++ ++ L +F Sbjct: 209 MVYWILCDEPSQAKWLTERERALIIRNVKVDQANNPPEHGHSMLSALKDSRVYILSLSYF 268 Query: 225 GLSVVNKGLDSWMPTYLMTVRGLDLKAVGLLLPLPYVMAGISTAIGGWLMMRFFNGR-ER 283 + W+P L +D+ +GL +P+ GIS AIG L+ R + R ER Sbjct: 269 TFISGIYAIGFWLPAMLKNAGVIDVFQIGLYSMIPF---GIS-AIGMVLISRSSDKRLER 324 Query: 284 ------VMLVVSSALTAIFVYFMYVASDVTGVIIFQCLAYFFKSFVLAACFALPTKILD- 336 + +++L+AI ++ ++D+T +I +A +L +++ + Sbjct: 325 RWHLALCAFIGAASLSAITMF----SADLTMSLIVMTVATTAIYTLLPLFWSITSAYFTG 380 Query: 337 TRLIGSSVGMVNLGGQAAGFISPLVIG 363 T S+ ++N G G SP +IG Sbjct: 381 TVAAAGSIALINSLGLIGGMASPSIIG 407 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.330 0.143 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 713,486 Number of extensions: 28826 Number of successful extensions: 177 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 174 Number of HSP's successfully gapped: 6 Length of query: 401 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 317 Effective length of database: 723,567 Effective search space: 229370739 Effective search space used: 229370739 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)