BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1087.p
         (305 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093853|ref|YP_001098928.1| hypothetical protein HEAR0601 [...    75   3e-15

>gi|134093853|ref|YP_001098928.1| hypothetical protein HEAR0601
           [Herminiimonas arsenicoxydans]
          Length = 271

 Score = 75.5 bits (184), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 99/229 (43%), Gaps = 12/229 (5%)

Query: 44  PGDSEPLPPGTDLALLYYQHAERDRVNVNGRSAVPDFRLTSDIALARFVHWTTLGGFVVT 103
           PG     PPGT    LY    + +   ++G+    D  L +   +  + ++    G   +
Sbjct: 8   PGAFAVAPPGTQALSLYLYERKYEGFYIDGKR-FGDSELKAHATVLAYTNFGQTAGMPSS 66

Query: 104 PQVILPFGRLDMRGAGNQ-------TVSGMGDPMFGSNIWLYNNKESERYFSLGGYFAIP 156
             + LP   + +R            T +G+GD   G   W  N+ ES R  ++     IP
Sbjct: 67  WNIALP--DIHVRKTSGSLPYGFGDTTNGLGDVRLGYTFWPVNDTESGRSLAIASTLQIP 124

Query: 157 AGSYDAAKASMNLGENRWKGVVEVNWVQAIISKVLYAEATLEFDKFGDNNNYAGARLRQD 216
           +  YD ++ S+N G+NRW+  +++ W+Q + S + + +   E   +  N+N+ G  + Q 
Sbjct: 125 SADYDNSQ-SLNAGDNRWRATLQLGWIQKLSSTLTF-DFVPEVSFYSPNHNFVGFGMTQK 182

Query: 217 NVYELQTHLRYILNDKNQLGVSYFHTIGGETYLNGVAQNDRQTSDRALL 265
             Y   T+LR+      +  V +    GG   +NG   ++ +   R  L
Sbjct: 183 PTYAATTYLRWRFMPIWEANVGFQANRGGAQNINGYVLDNERRQQRVFL 231


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 594,698
Number of extensions: 25063
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 224
Effective length of database: 733,452
Effective search space: 164293248
Effective search space used: 164293248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)