BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1086.p
         (329 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096247|ref|YP_001101322.1| hypothetical protein HEAR3092 [...    86   3e-18

>gi|134096247|ref|YP_001101322.1| hypothetical protein HEAR3092
           [Herminiimonas arsenicoxydans]
          Length = 807

 Score = 85.5 bits (210), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 134/322 (41%), Gaps = 21/322 (6%)

Query: 5   ISTTELPTSQRFRFWSEVVDNYFVKLDCRIEPVPTEKAKDGLVAQLNHAQLGSLDLLEVQ 64
            ST   P   R   W     N    L  + E     KA          +Q GS+    + 
Sbjct: 8   FSTDAFPVELREAAWQ----NALASLALKSEIASKNKASLIGYVTFGVSQPGSV-FSTLN 62

Query: 65  AHPQTV-VRNPLRGQDEDYFLFHLQTQGDCQIIQDDRKIVIKPGEMAMYDTRRPYQVSLR 123
           A PQ    R+P      +  +  +  +G  QI        +  G++ + D+ R ++++L 
Sbjct: 63  ASPQAFSARDPAMLTRTNSVIVFVLFEGVGQIDVGAETAAVSAGDIYLLDSSRQWKLALT 122

Query: 124 EEFRMRTMRIPVELLRLQLPHPERLVASPVLPQGFVGRFLGNTINSLFDEHQDIPQDQGS 183
             FR   +R+       +L H  +     +     VG      +N++          Q +
Sbjct: 123 SAFRASVIRLEKANFISRLMHTGKTDICKISSASGVGNIALEFVNAI--------TCQLA 174

Query: 184 ALAKATVEMVALGLQSVLPA-------DEALSSSRMCQYHLERIKHCISCHLGNAELNVE 236
           +L    +E +   L ++L A       ++   S+ M   HL RI   I   L + EL+  
Sbjct: 175 SLGSGDLEQMEDALSTMLVASLAHKEEEDVSHSTSMQLSHLRRICRTIEARLTDPELSAI 234

Query: 237 WLALRLRMSVSSIHRAFECESQTVTEYIWNKRLDACKEALANHKLQRRSISDIAYDWGFS 296
            +A   ++S   + + F     T  EY+  +RLD C+  L+N  L+  +IS++ + WGF+
Sbjct: 235 DIARSEQLSARYLQKLFASAGTTFGEYVKKRRLDRCRIDLSNLSLKHLTISELCFRWGFN 294

Query: 297 SNAHFSRAFKRHTGMSPRDFKA 318
             A+FSRAF    G+SP+ +++
Sbjct: 295 DAANFSRAFHLEFGISPKGYRS 316


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 585,238
Number of extensions: 22260
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 247
Effective length of database: 730,157
Effective search space: 180348779
Effective search space used: 180348779
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)